PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g25370
Common NameKR1
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 688aa    MW: 74744.7 Da    PI: 6.5587
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g25370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07277297526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ GtC++ d C +aHg
  CA06g25370 277 PCPDFRK-GTCQRADACEYAHG 297
                 8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.1E-1733173IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.89E-1552158IPR020683Ankyrin repeat-containing domain
PfamPF127964.4E-870144IPR020683Ankyrin repeat-containing domain
SMARTSM002480.008475105IPR002110Ankyrin repeat
PROSITE profilePS5029715.37975159IPR020683Ankyrin repeat-containing domain
CDDcd002044.42E-1377172No hitNo description
SMARTSM002480.069110142IPR002110Ankyrin repeat
PROSITE profilePS5008810.633110145IPR002110Ankyrin repeat
SMARTSM003562.1E-4272298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.577277299IPR000571Zinc finger, CCCH-type
SMARTSM0035663307330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MCSGSGSRVC SADLAMEAKI QDQKELVPNF SLLLELSASD DIRNFQKAVE EEGHDINEVG  60
LWYVRKVGVK KMGYEERTPL MVAATFGSKQ VLNYILEKGC VDVNQTCGSD RATALHCAIV  120
GGSSALPEVV KLLLDASADA NLVDADGKRA VDLISSRGRC LNSRRKILEH LLGGNSGDEG  180
EGSGCIDQII SEQAEEQLLL TPTVSKFGSE KKEYPVDPSL PDIKNGIYGT DDFRMYIFKV  240
KPCSRAYSHD WTECPFVHPG ENARRRDPSK YHYSCVPCPD FRKGTCQRAD ACEYAHGIFE  300
CWLHPAQYRT RMCKDETNCN RRVCFFAHKP GELRPLYPST GSAVLSPRSY SNGTTSLDIS  360
SITPLALGSP SVMMPPTSTP PMSPAGASSV GGSLWPGQSS HSTPTLQLPI SRLKTSINAR  420
HMELGNGYLR QDQLMDDLSA LSSPSRWNGS SAKAATFATS FNDLNGELGR HGGLEPTNLD  480
DILATLDSKI LSQLQGLSLD AVSPHLQSPK GMQMRQNMNQ QHMTSYSSGQ SSPSFRTSSS  540
YGIDASIAAA TAASSSRSAA FAKRSQSFID RSAVGRLSNA SAMPSNLSGW GSPDGKLDWG  600
IQKDELNKLR KSASFGLRNS GNRFPTNEGS VSDSSVESDV SWVQPLDSPA RQLVMEDQQY  660
RLNASRGSEA TPTWVDQLYM EQEQIVH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8624640.0DQ862464.1 Capsicum annuum Cys-3-His zinc finger protein (KR1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577686.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2G2ZEH10.0A0A2G2ZEH1_CAPAN; Uncharacterized protein
STRINGSolyc06g082010.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-173C3H family protein
Publications ? help Back to Top
  1. Seong ES, et al.
    Characterization of a stress-responsive ankyrin repeat-containing zinc finger protein of Capsicum annuum (CaKR1).
    J. Biochem. Mol. Biol., 2007. 40(6): p. 952-8
    [PMID:18047791]