PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g22720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | TALE | ||||||||
Protein Properties | Length: 695aa MW: 77529.5 Da PI: 7.8065 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 412 | 449 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + CA06g22720 412 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 449 554459******************************88 PP | |||||||
2 | BELL | 121 | 5.2e-39 | 276 | 347 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kkakL+++leeV++rY+qy++q+q+++ssFe+vag+gsak+Yt+lAl+aiS++FrcLkdaiaeqi CA06g22720 276 QRQELQMKKAKLVTMLEEVEQRYRQYHHQMQIIVSSFEQVAGIGSAKSYTQLALHAISKQFRCLKDAIAEQI 347 69*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.3E-59 | 199 | 345 | IPR006563 | POX domain |
Pfam | PF07526 | 3.0E-48 | 204 | 344 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.05 | 390 | 453 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-10 | 393 | 457 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.47E-12 | 393 | 454 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-17 | 394 | 459 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-29 | 396 | 459 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-18 | 410 | 449 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MYYGGTSDNN IQADQHHHAN NNIQTLYLMN PNSYMQGYNT TTDTQQQQQQ LLFLNSSPAG 60 NNALNPGNIP HAPLQHQQHF VGVPLPAVSL HDQINHHGLI QRLWNNQSGS RHHHHESHQV 120 IPSSMVVSTT TDLASQLGFQ RPIVVSPTPQ HRQQQQQQQQ GGLSLSLSPQ QQQQISFNNI 180 SSTSSPRTNS VTIRGSLDGG SSNMVLGSKY LKAAQELLDE VVNIVGKSIK RNDHQKKEEN 240 SMNKESMPLT SDVNTSSGTG SSRPKNEVAA ELTTAQRQEL QMKKAKLVTM LEEVEQRYRQ 300 YHHQMQIIVS SFEQVAGIGS AKSYTQLALH AISKQFRCLK DAIAEQIKAT SKSLGEEEGI 360 GGKIEGSRLK FVDHHLRQQR ALQQLGMMQP NAWRPQRGLP ERAVSVLRAW LFEHFLHPYP 420 KDSDKIMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEVKNQEQNS TTSQDDKNKE 480 NNTMVSKSIA PHEEKQPITT SLLQDGTEIS TSTISTSPTV DAASLQAQHA HNFSFLGTFN 540 MENTTTNTTA VVDHMENNAK KPRNDMQKYS PSSILSSVDM EAKARESSNK GFNNPLMAAY 600 AMGDFGRFDP HEQMTANFHG NGVSLTLGLP PSENLAMPVS QQNYLSNQNI DMGSRPEMGS 660 HYNRMGYESI DFQSGNKRFP TQLLPDFVTG NLGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 6e-16 | 399 | 457 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 6e-16 | 399 | 457 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016577965.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A2G2ZDB5 | 0.0 | A0A2G2ZDB5_CAPAN; BEL1-like homeodomain protein 6 | ||||
STRING | Solyc06g074120.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 2e-97 | BEL1-like homeodomain 1 |