PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g11660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 201aa MW: 22921 Da PI: 9.2395 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 53.8 | 6.3e-17 | 49 | 134 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+Y GF vrk ++++ +ge+t+r f Cs+eg++++ + ++++r+r e r+gC ++k k + +g wev +++ H+H++ CA06g11660 49 AYNSYVVARGFGVRKGGKTNN-VKGETTRRLFLCSCEGQSDKLSPF-QERKRQRLEYRCGCMTRIKFKIS-NGIWEVCEFNDVHSHPMI 134 5***************98877.8888**************999988.99999***************999.***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.8E-14 | 49 | 134 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MKDAHGDKGK DSSAQEDFSV NEPNICNTSK NFVFEIDMKI NSEKESYNAY NSYVVARGFG 60 VRKGGKTNNV KGETTRRLFL CSCEGQSDKL SPFQERKRQR LEYRCGCMTR IKFKISNGIW 120 EVCEFNDVHS HPMIEDNLKH FIHSGRRLTN ATKNIVGSMI DAGIRTKKVV RYLQNEAGEV 180 KNVGFIEQDA QTLFKHIREI * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628526.1 | 2e-75 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_016467903.1 | 2e-75 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_019266793.1 | 7e-75 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A2G2Z9X6 | 1e-147 | A0A2G2Z9X6_CAPAN; Uncharacterized protein | ||||
STRING | XP_009628526.1 | 8e-75 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1726 | 9 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 6e-14 | FAR1-related sequence 10 |