PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g18380
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARR-B
Protein Properties Length: 664aa    MW: 73479.7 Da    PI: 5.6229
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g18380genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.63.2e-29212265155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  CA05g18380 212 KPRVVWSVELHQQFVQAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 265
                 79*******************.********************************8 PP
2Response_reg75.71.7e-25321401109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l++ +y ev+    +e al +l+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ + + +  Ga 
    CA05g18380  32 VLVVDDDPTCLRILEKMLRNCHY-EVTKSNRAEIALSMLRENRngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKDVVMKGVTHGAC 126
                   89*********************.***************99999***********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
    CA05g18380 127 DYLIKPVRIEALKN 140
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.7E-1809653IPR017053Response regulator B-type, plant
SuperFamilySSF521722.56E-3529153IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.3E-4229153No hitNo description
SMARTSM004481.4E-2930142IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.42531146IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.1E-2332140IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.69E-2733146No hitNo description
SuperFamilySSF466891.18E-20209269IPR009057Homeodomain-like
PROSITE profilePS5129411.351209268IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-30211270IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-25212265IPR006447Myb domain, plants
PfamPF002492.0E-8214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MNLVASSSVS WKSNSNNSDR VEKNEFPAGL RVLVVDDDPT CLRILEKMLR NCHYEVTKSN  60
RAEIALSMLR ENRNGFDIVI SDVHMPDMDG FKLLEHVGLE MDLPVIMMSA DDSKDVVMKG  120
VTHGACDYLI KPVRIEALKN IWQHVIRKKK HEWKDKDFEQ STIVEDGDQH QKPPEDVDYS  180
SSANEGNWKS SKRRKEEEDE TEERDDTSTL KKPRVVWSVE LHQQFVQAVN QLGIDKAVPK  240
KILELMNVPG LTRENVASHL QKYRLYLRRL SGVSQHQNGL NDSFMGHPEA AYGTMTSFSG  300
LELQALAATG QLPAQSLATF QAAALGRSAT KSAISMPLVD QRNLFSFENP KLRYPEGQQQ  360
LNNSNKQINL LHGIPTTMEP KQLADLHQSS QSFVAMNMQG NARMQQNNAL LMHMSQQQQK  420
QPSRGQMLNE SSNGQVSQPP LSMPQPLSSN GIPAAILSRN GIVDNVRGPV YNPVSPASSM  480
VDFSLNQTTE LQNSFPLVSS NSGMSTLTSK RLLPEEVNSD IKGSRGFPVG YDIFEELHQQ  540
KSQDWGIQNV GSAFGASDHS GIPGTLDVSP SMLVQQGISS MKKNGQNGNS PMGGPQLNLF  600
SGGNLLTVKA EQLPDTSYQS NLFLEQFGQD DLMSAILKQQ ESVGEVETEF GFDGYPPLDN  660
LPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-21211271464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572168.10.0PREDICTED: two-component response regulator ARR1-like isoform X1
RefseqXP_016572169.10.0PREDICTED: two-component response regulator ARR1-like isoform X2
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A1U8GVK50.0A0A1U8GVK5_CAPAN; Two-component response regulator
TrEMBLA0A2G2ZKA30.0A0A2G2ZKA3_CAPAN; Two-component response regulator
STRINGPGSC0003DMT4000605060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.21e-169response regulator 1
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]