PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g01100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 278aa MW: 31252.6 Da PI: 8.3826 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00086 | 215 | 237 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ L H ++ H CA05g01100 215 PCPQCHLRFSTVKALIDHVQKvH 237 5*****************99988 PP | |||||||
2 | zf-C2H2 | 15.4 | 5.2e-05 | 249 | 271 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ L+ H + H CA05g01100 249 VCPRCSKGFRDPVALVEHVEKeH 271 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 8.37E-11 | 4 | 59 | No hit | No description |
Gene3D | G3DSA:4.10.1110.10 | 2.9E-9 | 10 | 53 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS51039 | 7.37 | 10 | 55 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0048 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 2.6E-12 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 2.0E-11 | 90 | 148 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 2.55E-9 | 93 | 147 | No hit | No description |
PROSITE profile | PS51039 | 7.988 | 98 | 145 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0069 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 7.6E-9 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.035 | 214 | 237 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13894 | 6.1E-4 | 215 | 237 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 216 | 237 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.9 | 248 | 271 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.016 | 248 | 276 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 250 | 271 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGTPEFANLG KHCSVEDCRQ IDFLPFTCDC CHKVYCLDHR SYIRHQCPTA NKNNVTVVIC 60 PLCAKGVRLN PNEDPNITWE SHVNMECDPS NYEKATKKKK CPVPRCKELL TFSNTIKCRD 120 CTLDHCLKHR FGPDHNCPGP KKPEPSFQFM NFLNGSKDEP KKAQPTSSSR WTTSLLKVVS 180 SVKEKFNSEF NQTQQTGQSS HATNHAVTNT SQVEPCPQCH LRFSTVKALI DHVQKVHEKN 240 GVMNLTVDVC PRCSKGFRDP VALVEHVEKE HKGTSKG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571941.1 | 0.0 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like | ||||
Swissprot | Q8VZ42 | 1e-117 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A1U8GKY9 | 0.0 | A0A1U8GKY9_CAPAN; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | A0A2G2ZF44 | 0.0 | A0A2G2ZF44_CAPAN; zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like | ||||
STRING | PGSC0003DMT400070044 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5311 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-120 | C2H2 family protein |