PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g20320
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 505aa    MW: 54673.8 Da    PI: 8.5529
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g20320genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-055173123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  CA04g20320 51 FVCEICNKGFQRDQNLQLHRRGH 73
                89*******************88 PP
2zf-C2H216.72.1e-05127149123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC+ C+k +  +s+ k H++t+
  CA04g20320 127 FKCERCTKKYAVQSDWKAHMKTC 149
                 89*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-75073No hitNo description
Gene3DG3DSA:3.30.160.601.7E-55073IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.0E-55173IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0175173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9495173IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SMARTSM0035518092122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.0E-6115148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.08E-7122148No hitNo description
SMARTSM0035563127147IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MAEMEISSSM AETVAQNNFP VKRKRNLPGN PDPEAEVIAL SPKTLMATNR FVCEICNKGF  60
QRDQNLQLHR RGHNLPWKLR QRTSNEVKKR VYVCPELTCV HHDPCRALGD LTGIKKHFSR  120
KHGEKKFKCE RCTKKYAVQS DWKAHMKTCG SREYRCDCGT LFSRRDSFIT HRAFCDALAQ  180
ESARSNQPLM GITNVEGDHL KVVDEGVSKT ASSSLSSPPP QPLTPSTGVL SPVLSIQSSD  240
LPAENQNHGG VQLQQAQGTR MPVSTTHVTT ISTATASSTG PSSSKVFASV FQLSSADQHA  300
HSSYSDILRA IETERMTNVE PMSLSLSSSF YLSNNGPTLF QEHTGNGQCY GSTTLQPALS  360
ATALLQKAAQ MGSTTSNNSF LRGFGLAMSL STSAPDENSL ATRTNALRQV KLENNIADVP  420
PMLGIQHPSN GPSGLTDLMM GPSISHQSMM FGSKPPTLDF LGLGNGAIVA PSNGFSAFLR  480
SMEGGFGVVP EPWDDPSDRK PAML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33123184364Zinc finger protein JACKDAW
5b3h_F2e-33123184364Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568601.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLA0A1U8GBA70.0A0A1U8GBA7_CAPAN; protein indeterminate-domain 2-like
STRINGPGSC0003DMT4000131740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-122C2H2-like zinc finger protein