PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g16920
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 315aa    MW: 34756.9 Da    PI: 7.2207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g16920genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-10224272355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  CA04g16920 224 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 272
                 58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-17219289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.23E-11219276No hitNo description
Gene3DG3DSA:4.10.280.101.8E-16221289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472221271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-7224272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10227277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGSKENGSFN CPTGMNRADS MPNVDPYSGF GWDPLLSMNQ KGVFKGSSVV GHNEFANLPY  60
QSSHFAHYPS DSNLAEMVPK IPPFGNESFS ELVNTFPLQE QLRGANCYAN FVKNRGIATE  120
GECQISGEGA VEVSPNGKRK MSENHSLSNA NKNVEGELQK APSRDSSDCS KEQDGGKRHK  180
TDQNVSPNLR SKQAGKQVKD DSDGGEPPKD NYVHVRAKRG QATNSHSLAE RVRRERISER  240
MRLLQELVPG CNKITGKAVM LDEIINYVQS LQQQVEFLSM KLATVNPELN FDIDRILSKE  300
VSIVSIFIHI QSLQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568916.10.0PREDICTED: transcription factor bHLH74-like
RefseqXP_016568917.10.0PREDICTED: transcription factor bHLH74-like
RefseqXP_016568918.10.0PREDICTED: transcription factor bHLH74-like
RefseqXP_016568919.10.0PREDICTED: transcription factor bHLH74-like
TrEMBLA0A2G2ZRA70.0A0A2G2ZRA7_CAPAN; Transcription factor bHLH76
STRINGSolyc04g077480.2.10.0(Solanum lycopersicum)
STRINGPGSC0003DMT4000125910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52502435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-53bHLH family protein