PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g16260

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 586aa MW: 61945.9 Da PI: 9.9649

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g16260	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.5e-09	204	248	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W++I ++ Rt+ q+ rw CA04g16260 204 RKPWSAAEDRELIAAVQKCGEGNWASILKEDFkGDRTASQLYQRW 248 789************************997444699999999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.3E-14	197	255	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.612	199	256	IPR017930	Myb domain
SuperFamily	SSF46689	2.58E-12	201	254	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-11	203	254	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-7	204	248	IPR001005	SANT/Myb domain
CDD	cd11660	2.08E-14	205	253	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
MMEKRKFKKR VFVSEHDMST LLQRYTAMTM LTLLQEVAQV KESKIDWNEL VKKTTTGITN 60 AREYQMVWRH LAYRQVLLDK VDDDAQPLDD DSDLESDLEA FPPVSNETSL EAAACVKVLV 120 ASRAPCDTNM SDGNTIEVPL TISMPNRQTS GTAAENSLHG ISAYGTKLTV PVTVQMQPLP 180 SVTAAEGLDT SGPGTASYNS RRRRKPWSAA EDRELIAAVQ KCGEGNWASI LKEDFKGDRT 240 ASQLYQRWSI IKKRNMAGNA SQLSEAQLAA RHAMSVAFGD NLRAACPTST NVGPNSSGGP 300 SNSSHFAAAD IASGGPQSKH RQDLVPSKPI VPKNPLAEPA INPDPMAKAA AMAASSPIAV 360 HSSAAASLQK AAQSKKGIHI MPGGTPAVKS SVPSSFSGLP SNVHFIRTGL VSRPAGLSNA 420 SQSGTQQLQA LRSASPAVQP RPATVPSRTN TASVVPSAPT SSPATAVLGV KSKAAVMQEN 480 QTAVLSNARS EKAGVIRAAS LANTPQQQVQ KGPTFGSGNR LTVKVEGQEL GGESKASRIW 540 IQEKLIPSQE SPSNKNENAK TELAAENTSG QGPAPVTCKV VFKDS*

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

MMEKRKFKKR VFVSEHDMST LLQRYTAMTM LTLLQEVAQV KESKIDWNEL VKKTTTGITN  60
AREYQMVWRH LAYRQVLLDK VDDDAQPLDD DSDLESDLEA FPPVSNETSL EAAACVKVLV  120
ASRAPCDTNM SDGNTIEVPL TISMPNRQTS GTAAENSLHG ISAYGTKLTV PVTVQMQPLP  180
SVTAAEGLDT SGPGTASYNS RRRRKPWSAA EDRELIAAVQ KCGEGNWASI LKEDFKGDRT  240
ASQLYQRWSI IKKRNMAGNA SQLSEAQLAA RHAMSVAFGD NLRAACPTST NVGPNSSGGP  300
SNSSHFAAAD IASGGPQSKH RQDLVPSKPI VPKNPLAEPA INPDPMAKAA AMAASSPIAV  360
HSSAAASLQK AAQSKKGIHI MPGGTPAVKS SVPSSFSGLP SNVHFIRTGL VSRPAGLSNA  420
SQSGTQQLQA LRSASPAVQP RPATVPSRTN TASVVPSAPT SSPATAVLGV KSKAAVMQEN  480
QTAVLSNARS EKAGVIRAAS LANTPQQQVQ KGPTFGSGNR LTVKVEGQEL GGESKASRIW  540
IQEKLIPSQE SPSNKNENAK TELAAENTSG QGPAPVTCKV VFKDS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016569016.1	0.0	PREDICTED: uncharacterized protein LOC107867351
TrEMBL	A0A1U8GCG8	0.0	A0A1U8GCG8_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2ZQZ2	0.0	A0A2G2ZQZ2_CAPAN; uncharacterized protein LOC107867351
STRING	XP_009795383.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3434	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	1e-68	MYB_related family protein