PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g15410

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 271aa MW: 30637.3 Da PI: 8.2228

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g15410	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.2	1.6e-06	112	131	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r nL+ H+ CA04g15410 112 FSCHICHKTFNRYNNLQMHM 131 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.78E-5	107	134	No hit	No description
PROSITE profile	PS50157	10.388	112	139	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.55	112	134	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.2E-4	112	131	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	114	134	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	159	191	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	150	196	216	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MEGSYFASSS NVENQIEPYD FFADKTQNAF EFLSLSQPCD NIDKISNDQE NPNWDNNKED 60 DVTVALHIGL PNSSNNIIPT DHHNQGDGNI IGAATQYWIP TPSQILVGFT HFSCHICHKT 120 FNRYNNLQMH MWGHGSQYRK GPESLKGTQP RAMLGIPCYC CEEGCKNNIN HPRAKPLKDF 180 RTLQTHYKRK HGTKRFACRK CGKCLAVKGD WRTHEKNCGK RWLCSCGSDF KHKRSLKDHI 240 ASFGEGHGPC PPTNNSFEGI EVQRAGNFFV *

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975516	1e-134	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016570849.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	1e-104	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A1U8GRW7	0.0	A0A1U8GRW7_CAPAN; protein TRANSPARENT TESTA 1-like
TrEMBL	A0A2G3CNX8	0.0	A0A2G3CNX8_CAPCH; Protein TRANSPARENT TESTA 1
STRING	Solyc04g074320.1.1	1e-167	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13264	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-107	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]