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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g00350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 20486.4 Da PI: 6.2833 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40 | 5.2e-13 | 12 | 52 | 5 | 45 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ks + fsk r+ + KKA LSvLC++e a++ifs tg+ CA04g00350 12 QKSSEDIVFSKKRQALCKKAMDLSVLCGIEFAILIFSVTGE 52 67778899******************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.9E-5 | 4 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-14 | 10 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.213 | 11 | 60 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-12 | 13 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-6 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-6 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MKESGDRKLQ KQKSSEDIVF SKKRQALCKK AMDLSVLCGI EFAILIFSVT GEPFIFGKPD 60 AELVVDHFLK AKQATECSSS CRATVEKICE HTRHPRMDQN KKVPIDDKGK GKAIEENSEC 120 STWKSVDGTD SETLEKQLTQ EIESFESDLI KEINELKLKI SAKDTESALK VISSTTPSNW 180 LSL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571385.1 | 1e-130 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2G2ZL24 | 1e-129 | A0A2G2ZL24_CAPAN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2297 | 12 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G66656.1 | 3e-13 | AGAMOUS-like 91 |