PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g36390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 537aa MW: 57918.8 Da PI: 8.8653 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H CA03g36390 96 FVCEICNKGFQRDQNLQLHRRGH 118 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 172 | 194 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ CA03g36390 172 WKCEKCSKRYAVQSDWKAHSKTC 194 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.16E-6 | 95 | 118 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 95 | 118 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 96 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 96 | 118 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 137 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.8E-4 | 160 | 193 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.16E-6 | 167 | 192 | No hit | No description |
SMART | SM00355 | 130 | 172 | 192 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MMKGLMNQQV PGVVEENMSN LTSASGEASV SSSNRNDNNN TTGGIYPPQY TFAPPIQQAQ 60 PAQQQIKKKR NQPGNPDPDA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL 120 PWKLKQRTSK EIRKKVYVCP ETSCVHHDPA RALGDLTGIK KHFCRKHGEK KWKCEKCSKR 180 YAVQSDWKAH SKTCGTKEYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITGNPILPTP 240 STSHMNFQFQ PFNAEIPVTF SLKKEQQTGF NLRPEIPSWL LVGGGGGPGP GPGPPPPSPI 300 ELSSSIFQSS RFGDQDYAQN HQQQGFMNPN PSLSGPTSGA MASSSPHISA TALLQKAAQM 360 GATMSNKAST VSAAAALGPA MLVRPHQIHV SSSATATESV NNATDFGLNL SSREDLTSGF 420 FNSLASYGNK AATATASAVV AHATMPVSTP TPSSLNDMMN SFSSTTPTGF EGSNFDDPFS 480 SIGILNPKNG NGDGNDDMTK DFLGLRPLSH SDIFNIAGLV NTSNENQSQN HKTWQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-35 | 168 | 229 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 5e-35 | 168 | 229 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 134 | KLKQRTSKEIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013659 | 0.0 | BT013659.1 Lycopersicon esculentum clone 132478R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562559.1 | 0.0 | PREDICTED: protein indeterminate-domain 7-like | ||||
Refseq | XP_016562560.1 | 0.0 | PREDICTED: protein indeterminate-domain 7-like | ||||
Swissprot | Q8H1F5 | 1e-122 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A1U8FUP5 | 0.0 | A0A1U8FUP5_CAPAN; protein indeterminate-domain 7-like | ||||
TrEMBL | A0A1U8G3J9 | 0.0 | A0A1U8G3J9_CAPAN; Protein indeterminate-domain 7 | ||||
STRING | Solyc03g121660.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-112 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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