PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g28100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 237aa    MW: 26385.2 Da    PI: 4.3843
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g28100genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.88.4e-1037855127
         NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy.kg.rapkgektdWvmheyr 127
                 +k+ yf ++ ++ +++++++ r+  +g W+ + +  +++++ +g++vg ++  ++  kg ++++++ t+W+m ey 
  CA03g28100   3 DKSGYFITPLKNPNKSDQKHARTCGNGAWRGQTSAVPIKNRkGGSVVGYRRNYIYTsKGsKTSSSVTTNWLMREYF 78 
                 56679****9999999**********************99867888*********954446777889********6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.7131102IPR003441NAC domain
SuperFamilySSF1019414.97E-162101IPR003441NAC domain
PfamPF023651.1E-4777IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGDKSGYFIT PLKNPNKSDQ KHARTCGNGA WRGQTSAVPI KNRKGGSVVG YRRNYIYTSK  60
GSKTSSSVTT NWLMREYFVG DDFFKANNIP KQDYALCRIK KHLRGKKDDD DDDAVNMEED  120
DALETIQGML LEPDSTCCTT QEVTEETDQW ESIINEVCDE KIDGVENTTA LVHGEYDLRR  180
CGEIRDVQED GVDGIGSNGI WEAINGILND VTVDIPDNLW LDVDHQPPLL LISSST*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566736.11e-176PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1U8G5V71e-175A0A1U8G5V7_CAPAN; NAC domain-containing protein 78-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-07NAC domain containing protein 2