PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g27850
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 354aa    MW: 39483.6 Da    PI: 6.4087
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g27850genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.79.7e-39101101101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 aCaaCk++rr+C+++C lapyfpa+qpk f+n+h+lFG+s++lk+l++l+++++++am+s++y+A+ar + PvyG+v+ i++l   ++  ++el+++++
  CA03g27850  10 ACAACKYQRRRCTPECLLAPYFPADQPKMFQNAHRLFGVSKILKILTHLDPSQKKIAMKSIIYQANARDKHPVYGCVAEIQNLLFSIQLCEEELQTVHA 108
                 7***********************************************************************************************998 PP

      DUF260 100 el 101
                 +l
  CA03g27850 109 QL 110
                 85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.0769110IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3610107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MTLKGGTSQA CAACKYQRRR CTPECLLAPY FPADQPKMFQ NAHRLFGVSK ILKILTHLDP  60
SQKKIAMKSI IYQANARDKH PVYGCVAEIQ NLLFSIQLCE EELQTVHAQL AFYRQQQQQQ  120
EISSTISDTV SQIQLGMPPP AIVAAPPPAN GINGNGLTLF HQDAPSQYNV AANATLPVQS  180
YSSYSNNSYA AYNNTTFVDP KENNVVNSLW IQQSYGNSVC NNNTMIMQSQ LPASQTIVVP  240
QEVTQDYDDI HHPFFDTIDD RQSYIDSKEA YDSRYAHFLR IVCFMVILNL RNFSRTSQTL  300
ISVTIIAFMI LNETPISCSS ESSLKDTRQS VEHVADNELK NAAACFSLTS INE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-2961137114LOB family transfactor Ramosa2.1
5ly0_B8e-2961137114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563576.10.0PREDICTED: LOB domain-containing protein 27-like
TrEMBLA0A2G3A1N40.0A0A2G3A1N4_CAPAN; LOB domain-containing protein 22
STRINGPGSC0003DMT4000342881e-171(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.15e-48LOB domain-containing protein 27