PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g23910
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 633aa    MW: 73383.5 Da    PI: 9.1034
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g23910genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.4e-07426465345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +WT+eE e+  +  k++G++ Wk  a ++g  + + ++k+ w+
       CA03g23910 426 KWTEEEYEIVRKFQKEHGNN-WKVLADELG--KHRFHVKDTWR 465
                      8*****************99.********9..56777887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.11350421IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-4353439IPR009057Homeodomain-like
PROSITE profilePS512949.192420472IPR017930Myb domain
SMARTSM007170.0081423470IPR001005SANT/Myb domain
SuperFamilySSF466894.65E-9424481IPR009057Homeodomain-like
PfamPF139211.6E-10427485No hitNo description
Gene3DG3DSA:1.10.10.606.3E-9440476IPR009057Homeodomain-like
PROSITE profilePS500908.629469537IPR017877Myb-like domain
SMARTSM007170.88473539IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-8477538IPR009057Homeodomain-like
PROSITE profilePS500907.34539592IPR017877Myb-like domain
SMARTSM0071722543594IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MDQGDEKEDM LRKLEKKSKK SNKNAATSGL GGESDGCEVK KKKKRKGGEH PGKCNKDNDE  60
DVVKYVERKK NNKLKKSCLN EPPLDFKISA PASASEMRDS EKVVETLGEI SSGDVVDEIR  120
RKKKSKKNIK TTNVVGVANT DIEAKTDDCD LKRKKEKKHG KHSEKFNEDS DEVALRIVEG  180
KKSRKLKKSR VAEQEKMHDT EDVQEDIVAE VDEGDISSPI KIEEKNRTDN GNIKKRKKVK  240
SGHSSEDPTH EIEEKNRRDN GNIKKRKKVK SGHSSEDPTH EIEEENRTDN GNIKKKKKVK  300
SGHSSEDPTH EIEEENRKDN GNIKKKKKIF PSSDDPSDEK HEIEDENLLR GKRFSKLEDE  360
IVKEAVHKYV DFHNLGEEGL KKILNSRSYP EIKGCWKEIG SAIPYRPYTA VYYRAQILFR  420
RSESRKWTEE EYEIVRKFQK EHGNNWKVLA DELGKHRFHV KDTWRRIKRP NQNKGQWTQE  480
EYQSLFDLVN TDLRLRLSEE KRSKYGMLRD NIAWTAISDK LSTRTEANCC LKWYDQLTSP  540
MVAKGEWADV DDYRLVDALF ELDASCIEDV DWDNLLDHRP GEICRKRWNQ MVLHIGKLKN  600
SSFAEQIEVL AKRYRPDFAE VREAWDNKPV VP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945KKKKKRK
24045KKKKRK
3253259EKNRRDN
4263267KKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563894.10.0PREDICTED: RNA polymerase I termination factor-like
RefseqXP_016563895.10.0PREDICTED: RNA polymerase I termination factor-like
RefseqXP_016563896.10.0PREDICTED: RNA polymerase I termination factor-like
TrEMBLA0A2G3A0W80.0A0A2G3A0W8_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000309470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-129MYB_related family protein