PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g19800

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 240aa MW: 27438.8 Da PI: 5.6109

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g19800	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	29	54	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp Cgk++ + + Lk+Hi++ H CA03g19800 29 HICPypECGKRYAHEYKLKNHISStH 54 679999****************9988 PP
2	zf-C2H2	16.9	1.7e-05	91	116	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C+ks+ + + L+ H+r+ H CA03g19800 91 YSCPyeGCDKSYIHEYKLNLHLRNmH 116 99*********************989 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.07E-10	9	59	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-10	15	55	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.845	29	59	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.031	29	54	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	31	54	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.9E-9	85	113	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.07E-6	86	121	No hit	No description
SMART	SM00355	8.2E-4	91	116	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.344	91	121	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	93	116	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSRKTDMLAF SLDFNLRSHM KTHSQENYHI CPYPECGKRY AHEYKLKNHI SSTHQKNTPD 60 APKYTPPVEK PVKTPKSTPA TYGSSSSERP YSCPYEGCDK SYIHEYKLNL HLRNMHPGHL 120 PDDNAKNAQS TADNEMDEGS DQDTYAARRG NGRIQKQSRP KPSLKQPPLK VARKGSSSAA 180 SQANLTISKK PWPLKEENYN EEDSEETEEE RERERDDVGE GWRYGENNDD DDEETEEDD*

Functional Description ? help Back to Top
Source	Description
UniProt	Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269\|PubMed:22508367, ECO:0000269\|PubMed:24451981, ECO:0000269\|PubMed:26961720}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269\|PubMed:26961720}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017694	0.0	AB017694.1 Nicotiana tabacum WREBP-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016564400.1	1e-145	PREDICTED: uncharacterized zinc finger protein At4g06634
Swissprot	Q2V3L3	7e-74	YY1_ARATH; Zinc finger transcription factor YY1
TrEMBL	A0A2G2ZZU5	1e-168	A0A2G2ZZU5_CAPAN; Transcription factor YY2
STRING	PGSC0003DMT400023459	1e-119	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7343	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.3	4e-65	C2H2 family protein

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315] Li T,Wu XY,Li H,Song JH,Liu JY A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network. Mol Plant, 2016. 9(5): p. 650-661 [PMID:26961720] Wu XY,Li T A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response. Front Plant Sci, 2017. 8: p. 323 [PMID:28348572]