PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g16190
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 373aa    MW: 42051 Da    PI: 8.41
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g16190genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.43.6e-2025115199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ffkv+   d + ++ l +p kfa++ ++   ++++  led+sgr+W+v++  +k++g+  +++GW eF +++gLk+g+f+vF++++++ f   v++f +
  CA03g16190  25 FFKVM--IDKSFLKVLHFPPKFARSVSHL--TDQKTYLEDSSGRRWRVRV--CKHGGSLAIKQGWPEFSSEHGLKVGEFLVFHYVQDKHF--IVQIFGT 115
                 89999..677777789*********9765..4568***************..*********************************99999..9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.94E-2321118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.87423116IPR003340B3 DNA binding domain
CDDcd100173.11E-2024113No hitNo description
Gene3DG3DSA:2.40.330.101.0E-2224118IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-1825114IPR003340B3 DNA binding domain
SMARTSM010192.8E-1625116IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MQRENKACDG CKDCRLIHGK GVISFFKVMI DKSFLKVLHF PPKFARSVSH LTDQKTYLED  60
SSGRRWRVRV CKHGGSLAIK QGWPEFSSEH GLKVGEFLVF HYVQDKHFIV QIFGTSACEK  120
IKFCSDVGKG RKRARTYLEA TNPVELLQTT AIDSVKKKSR LSAALESEKA TYKPNIVNFA  180
VNVDTVTEKG WSVHSAIHVD ESFCVIDKNT QYDQEDDRLC LHLSSFEMPA SKPVEEGISS  240
PLKGNNGNDN HVDTNSRSKT EPNLNLENKK LNSEALLSQL EAGIKATNMV SRPAEDVPPL  300
AEDIPPLGPK YKNSYEVSQF RKLSVHNKLL GFFFFFAVFV LNIHIRAMNL WCEGSAEDWF  360
CRHYVDLTSV LS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564640.10.0PREDICTED: uncharacterized protein LOC107863290 isoform X1
TrEMBLA0A2G2ZYX70.0A0A2G2ZYX7_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000392491e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-11B3 family protein