PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g30840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 255aa MW: 28959.9 Da PI: 9.673 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 96 | 118 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H CA02g30840 96 SCSVCSRVYPTSRLLSIHVSEaH 118 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.28 | 68 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.4 | 95 | 118 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 97 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.38 | 133 | 158 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 135 | 158 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAMEFETQRE LGFPFWKPIR RRFGPDDPFF AYGNIQRELL AKQIALDLTE EEKQLVQNII 60 TDEEISNLFC PIIGCGARMK SLDDFEDHYA TRHTASCSVC SRVYPTSRLL SIHVSEAHDS 120 FFQAKAARGF PMYECLVEGC GVKLKSYKSR QQHLVDKHKF SASYEFFRKA RPSKKQRQKL 180 QYKQASYQTQ ETSSAMQVEE ERIDNLVSAV SKLTTADSPS AISFGRSRTR GLSFVPRAVN 240 RQRGSVTSTG GTKK* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-132 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561735.1 | 1e-179 | PREDICTED: zinc finger protein 511 | ||||
TrEMBL | A0A2G3ACY0 | 0.0 | A0A2G3ACY0_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400052062 | 1e-174 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10211 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-111 | zinc ion binding;nucleic acid binding;zinc ion binding |