PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA02g27650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 423aa MW: 47026.6 Da PI: 5.0456 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9.1e-06 | 93 | 113 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk Fs+ L H+rtH CA02g27650 93 CKECGKEFSSLKALAGHLRTH 113 ********************9 PP | |||||||
2 | zf-C2H2 | 15.7 | 4.3e-05 | 122 | 144 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + L H+++H CA02g27650 122 HICEKCGKGFASMRALFGHMKVH 144 68*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.115 | 91 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.048 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.34E-10 | 92 | 144 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 93 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.5E-8 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 119 | 145 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.593 | 122 | 149 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.4E-4 | 122 | 146 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 9.9E-4 | 122 | 144 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 124 | 144 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.4E-5 | 336 | 364 | No hit | No description |
Pfam | PF13912 | 2.1E-8 | 340 | 363 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.4 | 340 | 362 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.871 | 340 | 362 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 342 | 362 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 423 aa Download sequence Send to blast |
MRGHLALISA AKKQKDSSKV GSEEEEEEEA ANIHEDLSIS EQSESSTSQE KENNISIGDD 60 GDDSIGYGLR ENPRRSWRVS DFKNCSLEMK NLCKECGKEF SSLKALAGHL RTHSKKGIEK 120 CHICEKCGKG FASMRALFGH MKVHSKRSTG DDQDSELSKQ SLSDFDNICP IRKKRSKIKY 180 KIDVNSSFSG LNESSSAISE VDEVEEAARC LLMLSVGVRD WDEYISILES SKDENVNLES 240 EPSFHCAKGI SAADAFTVKH LSHAVFSDSG CVDDYEKNYE IAEFSDELML VNTEITKVCY 300 STDMQFENDP SSSVVMEEFP FLNSCSLKNA EVEPVKSKKH KCPVCFKVFP LGQSLGGHKR 360 AHYTGFTESK TKEPMVKKLD DLVDNHKAFD LNTPVNAVDV GENDVELKLW WVGSSDGLMM 420 SN* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016558513.1 | 0.0 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | A0A1U8FQ81 | 0.0 | A0A1U8FQ81_CAPAN; zinc finger protein ZAT1-like | ||||
TrEMBL | A0A2G3ACI6 | 0.0 | A0A2G3ACI6_CAPAN; UDP-glucose 6-dehydrogenase 1 | ||||
STRING | Solyc02g088670.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6927 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26610.1 | 3e-11 | C2H2-like zinc finger protein |