PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA02g27600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 434aa MW: 48274.1 Da PI: 5.4984 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9.2e-05 | 93 | 113 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F + L H+rtH CA02g27600 93 CKECGKEFFSMKALAGHLRTH 113 ********************9 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.4e-05 | 122 | 144 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + L H+++H CA02g27600 122 HICEKCGKGFASMRALFGHMKVH 144 68*******************99 PP | |||||||
3 | zf-C2H2 | 11.6 | 0.00084 | 351 | 373 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C k+F++ +L H r H CA02g27600 351 HKCPVCFKVFPSGQSLGGHKRAH 373 79**************9999988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.15 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.803 | 91 | 118 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.84E-10 | 92 | 144 | No hit | No description |
Pfam | PF13912 | 1.5E-5 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 93 | 121 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.448 | 122 | 149 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 9.9E-4 | 122 | 144 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.6E-4 | 122 | 146 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 122 | 145 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 124 | 144 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.17E-5 | 347 | 375 | No hit | No description |
PROSITE profile | PS50157 | 9.182 | 351 | 373 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 351 | 373 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.7E-10 | 351 | 374 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 353 | 373 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 434 aa Download sequence Send to blast |
MRGHLALISA AKKQKDNSKV GSEEKEEEEA ANIHEDLSIS EQSESSTSQE KENNVSIGDD 60 GDDSIGYGLR ENPRRSWRVS DFKNCSLEMK NLCKECGKEF FSMKALAGHL RTHSKKGIEK 120 CHICEKCGKG FASMRALFGH MKVHSKRSRV DDQDSELSKQ SLSDFDNICP IRKKRSKIKY 180 KIDVNSSFSG VKESSSAISE VDEVEEAARC LLMLSVGVRD WDEYISVLEN SKNENVILES 240 ESSFHCAKGI SAADAFTVKH LSHAVFSDSG CVDDYEKNYE IAEFSDELML VNTEITKVCY 300 STDMQFENDP SSSVVMEDFP SLNSCPLKNA GVDFHPETNL LVSEPVKSKK HKCPVCFKVF 360 PSGQSLGGHK RAHYTGFTES KTKEPMVKKL DDLADNHKAF DLNTPVNAVD VGENDVELKL 420 WWVGSSDALL MSN* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562269.1 | 0.0 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | A0A1U8G2R8 | 0.0 | A0A1U8G2R8_CAPAN; zinc finger protein ZAT1-like | ||||
STRING | Solyc02g088670.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6927 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26590.1 | 2e-16 | C2H2-like zinc finger protein |