PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g22920

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 542aa MW: 56369.9 Da PI: 8.8691

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g22920	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H CA02g22920 66 FVCEICSKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	14.4	0.00011	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H + + CA02g22920 142 WKCDKCSKKYAVQSDLKAHSKIC 164 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.5E-5	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.11E-6	65	88	No hit	No description
SMART	SM00355	0.036	66	88	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.887	66	88	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.2E-5	130	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.11E-6	137	162	No hit	No description
PROSITE profile	PS50157	8.746	142	170	IPR007087	Zinc finger, C2H2
SMART	SM00355	66	142	162	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MPADPDNSSA MNDSTGSGEA SVSSSGNQVV PQKELVKKKR NLPGMPDPDA EVIALSPKTL 60 LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKRVYVCP EPSCVHHHPS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR 180 DSFITHRAFC DALAQESAKT LPEKPPNANE EPKTTAVASP SPPPPPPPPP APAPATESQP 240 PPPEAALPPA AAPKPLITPA VPPSSAVMSF ISSVQNPVAK ISADLLENPN TNPAGTATKQ 300 ILEETTAVAS LTGSCSSSCS NGSTSSSVFG SLFASSTASG SLPSQAPGFA VMFRAMPPDH 360 TLEMASPSST EPISLGLAMN HSSSIFRPAG QERRQYAPAP QPAMSATALL QKAAQMGAAA 420 TSSSLLRGFG VMSSTSSSNG QHEWSGRPID ANGASLSAGL GLGLPCDAGS GLKELMMGTP 480 SVFGPKHPTL DLLGLGMAAS VGPTPGLSAL ITSMGSNMDM VTSAGAFGSG DFSGKDLGRN 540 S*

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MPADPDNSSA MNDSTGSGEA SVSSSGNQVV PQKELVKKKR NLPGMPDPDA EVIALSPKTL  60
LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKRVYVCP EPSCVHHHPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR  180
DSFITHRAFC DALAQESAKT LPEKPPNANE EPKTTAVASP SPPPPPPPPP APAPATESQP  240
PPPEAALPPA AAPKPLITPA VPPSSAVMSF ISSVQNPVAK ISADLLENPN TNPAGTATKQ  300
ILEETTAVAS LTGSCSSSCS NGSTSSSVFG SLFASSTASG SLPSQAPGFA VMFRAMPPDH  360
TLEMASPSST EPISLGLAMN HSSSIFRPAG QERRQYAPAP QPAMSATALL QKAAQMGAAA  420
TSSSLLRGFG VMSSTSSSNG QHEWSGRPID ANGASLSAGL GLGLPCDAGS GLKELMMGTP  480
SVFGPKHPTL DLLGLGMAAS VGPTPGLSAL ITSMGSNMDM VTSAGAFGSG DFSGKDLGRN  540
S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-32	138	199	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-32	138	199	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF517794	0.0	EF517794.1 Solanum bulbocastanum BAC 27I18, complete sequence.
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016560587.1	0.0	PREDICTED: protein indeterminate-domain 1-like
Swissprot	Q9LVQ7	1e-171	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A1U8FMZ6	0.0	A0A1U8FMZ6_CAPAN; Protein indeterminate-domain 1
TrEMBL	A0A2G3AAD8	0.0	A0A2G3AAD8_CAPAN; protein indeterminate-domain 1-like
STRING	PGSC0003DMT400033039	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-105	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]