PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g08590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 355aa MW: 40627.9 Da PI: 9.9441 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 119 | 142 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg++F +++ L++H + H CA01g08590 119 YICRVCGRRFYSNEKLVNHFKQiH 142 89*****************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.28E-5 | 118 | 144 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-4 | 118 | 143 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.926 | 119 | 147 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0048 | 119 | 142 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 121 | 142 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 1.60E-13 | 191 | 271 | No hit | No description |
Pfam | PF01936 | 6.4E-9 | 193 | 271 | IPR021139 | NYN domain, limkain-b1-type |
Gene3D | G3DSA:3.40.50.1010 | 3.3E-9 | 204 | 278 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MMKYVKVGAF IHAIHSYNRF CHFESKPHLG FGSLDSQVRA SVGIFWDLDN KPPKSFPPYD 60 AATKLKKAAS EFGVVRFTVA YANRQAFSYV PPLVREQRKE RKALTLLEKS GVVKVVEPYI 120 CRVCGRRFYS NEKLVNHFKQ IHEREHKKRL SKIESARGKM RVKLVAKYAM KMDKYKGAVR 180 DVLIPKAGYV LADELKRAGF WVRTVENKPQ AADIALRNHL VDVMDKRMVD HVVLVSDDSD 240 FVEVLKEARL RCLKTVVVGD SNDGALKRIA DAAFSWQEIM MGKAKKEAVS VVGRWKDRDV 300 LKRLEWTYDP EVEKKLYYSE VESDDSDGFF SGEEDVGASV LKENAGAWWK LDSHS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016550101.1 | 0.0 | PREDICTED: uncharacterized protein LOC107850196 | ||||
TrEMBL | A0A2G2XWT7 | 0.0 | A0A2G2XWT7_CAPAN; Uncharacterized protein (Fragment) | ||||
STRING | PGSC0003DMT400002602 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12125 | 19 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 1e-130 | C2H2 family protein |