PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g05780
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 171aa    MW: 19689.4 Da    PI: 9.6904
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g05780genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.48.9e-141563149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k ie+k  r+v fskR+ng+ KKA+E S L++ +v  i+f + gk + y
  CA01g05780 15 KLIESKEARTVAFSKRKNGLDKKAKEYSNLTGEDVGFILFTQAGKPHSY 63
                569*****************************************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-17766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.801767IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-23892IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-13929IPR002100Transcription factor, MADS-box
PfamPF003191.8E-161763IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDKRGGKGRQ KIEMKLIESK EARTVAFSKR KNGLDKKAKE YSNLTGEDVG FILFTQAGKP  60
HSYGSPSIEK VIDKFHELKQ NDSQQNHTDM SKTNVFEAFE DLRKEVQAFK EKYLDSKMST  120
NKHMLENRLK QFEAYKSWLD KIKKEIKGDV PGEQFKFISE VALDLEEMSS *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566538.11e-121PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2G3AEZ41e-120A0A2G3AEZ4_CAPAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-19AGAMOUS-like 61