PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g87690
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 362aa    MW: 39659.3 Da    PI: 8.115
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g87690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.4e-30173232159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dgy+WrKYGqK+ +++++pr+Y+rC++a +Cpvkkkv+rs ed+++v+ tYegeHnh+
  CA00g87690 173 VKDGYQWRKYGQKVTRDNPCPRAYFRCSFApTCPVKKKVQRSIEDQSIVVATYEGEHNHP 232
                 58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-29165233IPR003657WRKY domain
PROSITE profilePS5081125.66168234IPR003657WRKY domain
SuperFamilySSF1182901.44E-25170233IPR003657WRKY domain
SMARTSM007744.6E-35173233IPR003657WRKY domain
PfamPF031061.8E-24174232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEFTSLVDTS LDLSFRPRPV LDKLPKQEVQ SDFTGLRGDN MGVKNETVDL LEELNRVSSE  60
NKKLTEMLTV VCENYNVLRN QMMEYMSTQN GVADDSAGSR KRKAESISNP NNSNSNVNIN  120
NNNNNLDVVP GRSSESSSSD EESSCKKLRE EHIKAKVTVV SMKTDASDTS LIVKDGYQWR  180
KYGQKVTRDN PCPRAYFRCS FAPTCPVKKK VQRSIEDQSI VVATYEGEHN HPMTSKPEAG  240
GANTTSTSTG SRLNVTTIAG TTASVPCSTT LNPSGPTITL DLTAPKTVEK RDMKMNQSAS  300
PTGGNSIHTS TGVEYQNRPE FQQFLIEQMA TSLTKDPSFK AALAAAISGK ILQHNNQTGR  360
W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-201722331373WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7896410.0AY789641.1 Capsicum annuum WRKY family transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312010.10.0probable WRKY transcription factor 40
TrEMBLA0A1U8H4S30.0A0A1U8H4S3_CAPAN; probable WRKY transcription factor 40
TrEMBLQ32W690.0Q32W69_CAPAN; WRKY family transcription factor
STRINGPGSC0003DMT4000733960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-83WRKY DNA-binding protein 40