PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g80430
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 504aa    MW: 57369.2 Da    PI: 10.5699
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g80430genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.2e-091248138
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                     + +W t+E+++l  av+++G+++W+ +a+++   Rt +
       CA00g80430 12 KVNWGTWEELILGSAVRRHGTRDWNVVASELR-ARTIY 48
                     579*****************************.77654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.713765IPR017877Myb-like domain
SuperFamilySSF466894.27E-5866IPR009057Homeodomain-like
SMARTSM007173.1E-61167IPR001005SANT/Myb domain
PfamPF002492.0E-71261IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-51265IPR009057Homeodomain-like
CDDcd001672.75E-51464No hitNo description
SuperFamilySSF473706.54E-19260375IPR001487Bromodomain
SMARTSM002971.5E-17270374IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.2E-17273394IPR001487Bromodomain
CDDcd043696.10E-15273369No hitNo description
PfamPF004394.2E-11279358IPR001487Bromodomain
PROSITE profilePS5001410.567285355IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MEEEKTRVGP RKVNWGTWEE LILGSAVRRH GTRDWNVVAS ELRARTIYPH DFTPEACKAR  60
YEELRKRYSG CTAWFEELRK RRVEELKREL VRSESSIGSL QLKIESLKAE RERSGQLDYG  120
LSHTESPAPL TKSEDIEFSV KEEAKDGLSA GSFTLDIRTN QSPESQVPAI PSATETVVKL  180
EPLESWEQDK APSTSKVTEA ANGNGGAVRK RRGKRRRKDS VWDAKEGSIE DSDNVCSTSL  240
ASTSHCKEIL TSCDQSIRHS AVSNHRGCLS RFRNDDLMRI FNSITQHEAA MVFRHRLDSQ  300
KRARYKKIIR RHMDIETARS RLANWSIKTP GELFRDFLLL ANNAMVFYSK RTREYKSAMA  360
LRDIVTKVYR EHYKDSYYKA TSSLLPWPTI GNPPGKPRSV RPRPSKDKLQ AKYGNNVKDI  420
IGGTLGKQNH KAVDADSKVP LQSFLSAKKG FKRPGKIKCG STIETVNPQP KVQAKEPSQH  480
NIKVKKDHRV KPVTKERKRA RQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16481RKRYSGCTAWFEELRKRR
2210218RRGKRRRKD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559929.10.0PREDICTED: uncharacterized protein LOC107859428 isoform X1
TrEMBLA0A1U8FW300.0A0A1U8FW30_CAPAN; Uncharacterized protein
TrEMBLA0A2G2XVQ40.0A0A2G2XVQ4_CAPAN; uncharacterized protein LOC107859428 isoform X1
STRINGPGSC0003DMT4000577580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.11e-12DNA-binding bromodomain-containing protein