PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g50270
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 615aa    MW: 66885.7 Da    PI: 5.0626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g50270genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12442487454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  CA00g50270 442 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 487
                 799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.8E-5554238IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.111438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.73E-15441492No hitNo description
SuperFamilySSF474597.33E-18441511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10442487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-17442508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-16444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MNIWSTSNTT TTTTTNICDA NMMEAFLSSD VPSIWPAEST NVAIQAPYFN QESLQQRLQA  60
LIEGGASESW AYAIFWQSSD LEAPSVLGWG DGYYKGEEDK NKRNSSMSAS FFTEQEHRKK  120
VLRELNSLIG GGGVVGGDAD NTVDEEVTDT EWFFLISMTQ SFANGNGLPG LAMYSSSPIW  180
VTGGERLGAS QCERARQAQG FGLQTIVCVP IANGVVELGS TELIFQSSDL MNKVKVLFNF  240
NIDMGSVTGS CAVQAEPDPS ALWLTDPTSS AAKDSLNVVT NTASNGSKQF VSENAAVHNR  300
QHFTRELDFS GYGFDGRNKN GNGSISCKPE SGEILNFGDG IKRSASGGNV SLFSGQSQFG  360
LSEDNKNKKS SLVSRGRNEE GMLSFVSSVI LPTLTTGKSG GGGDSDHSDL EASVVKEAIV  420
EVEKRPRKRG RRPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA  480
IAYINELKSV VQNSDLNIED LRNQIEYLRK ELANKGSSNY PGPSPPQNQD LKILDLDIDV  540
KVSGWDAMIR IQCSKKNHPA ARLMGALKDL DLDVQHASVS VVNDLMIQQA TVKMSSRVYA  600
QEQLRLALTS KIAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-65472412195Transcription factor MYC3
4rqw_B2e-65472412195Transcription factor MYC3
4rs9_A2e-65472412195Transcription factor MYC3
4yz6_A2e-65472412195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1423431KRPRKRGRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-AACGTG-3') found in a number of promoters of jasmonate-induced genes (PubMed:15231736). Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:30518626). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). Acts synergistically with EOT1 in the transactivation of TPS5 (PubMed:24884371). Involved in type VI glandular trichome development (PubMed:30518626). Involved in the activation of terpene synthases required for volatile mono- and sesquiterpenes synthesis by the glandular cells of type VI trichomes (PubMed:30518626). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371, ECO:0000269|PubMed:30518626}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by methyl jasmonate and wounding. {ECO:0000269|PubMed:15231736}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550978.10.0PREDICTED: transcription factor MYC2-like
SwissprotA0A060KY900.0MYC1_SOLLC; Transcription factor MYC1
TrEMBLA0A1U8EUY90.0A0A1U8EUY9_CAPAN; Transcription factor MYC2
TrEMBLA0A2G3APJ40.0A0A2G3APJ4_CAPAN; transcription factor MYC2-like
STRINGXP_009587276.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33002449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]
  3. Xu J, et al.
    SlMYC1 Regulates Type VI Glandular Trichome Formation and Terpene Biosynthesis in Tomato Glandular Cells.
    Plant Cell, 2018. 30(12): p. 2988-3005
    [PMID:30518626]