PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_48124 | ||||||||
Common Name | KK1_044858 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | Trihelix | ||||||||
Protein Properties | Length: 162aa MW: 18053.3 Da PI: 10.1519 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 57.3 | 4e-18 | 21 | 103 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v++++ ++ ++++++qCk+k e+++kry+ + + + + ss++p++++l+ C.cajan_48124 21 EWSEGAVSRLLEAYEAKWVLRNRAKLKGHDWEDVARHVtSRANCTKTSTQCKNKVESMKKRYRSESAAADHG----SSSWPFYSRLD 103 5*************************************788899***********************99986....779*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.1E-22 | 19 | 103 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MKEECVRKVG FGRGERVKRD EWSEGAVSRL LEAYEAKWVL RNRAKLKGHD WEDVARHVTS 60 RANCTKTSTQ CKNKVESMKK RYRSESAAAD HGSSSWPFYS RLDLLLRGTA PPPPPPPPQS 120 PVEPSQPPPA APSLANAQNS HGSYGYGVHD KLAKVNSNAH FF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_48124 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC160455 | 3e-75 | AC160455.26 Glycine max cultivar Williams 82 clone gmw2-10n21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020207224.1 | 1e-112 | trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A151QV20 | 1e-117 | A0A151QV20_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA13G26550.1 | 2e-72 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4994 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 2e-48 | sequence-specific DNA binding transcription factors |