PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_47208 | ||||||||
Common Name | KK1_048843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 202aa MW: 22868.1 Da PI: 9.7167 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.2 | 4.4e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +l +++q+G+++W++I++ g+ R++k+c++rw +yl C.cajan_47208 14 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.7e-15 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ E++ +v+++ +G++ W++Ia+ ++ gRt++++k++w++ C.cajan_47208 68 GQFSDSEEQTIVKLHSVFGNR-WSLIAAQLP-GRTDNDVKNHWNT 110 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.378 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.25E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.19E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.799 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.4E-14 | 68 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.83E-11 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY 60 LRPDFKHGQF SDSEEQTIVK LHSVFGNRWS LIAAQLPGRT DNDVKNHWNT KLKKKLSGMG 120 IDPVTHKPFS HLMAEIATTL APPQAAHLAE AAKGCFKDEV LHLLTKKPIN FQGQHSTAAL 180 GNNITNYINC KPEEKDDTVE KI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_47208 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-134 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020209217.1 | 1e-152 | transcription factor MYB80 | ||||
Swissprot | Q7XQN1 | 1e-113 | MYB80_ORYSJ; Transcription factor MYB80 | ||||
TrEMBL | A0A151UEK9 | 1e-151 | A0A151UEK9_CAJCA; Transcription factor MYB39 | ||||
STRING | XP_004500173.1 | 1e-144 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10878 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 1e-105 | myb domain protein 103 |