PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_47016 | ||||||||
Common Name | KK1_047804 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 245aa MW: 27239.4 Da PI: 9.0984 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00092 | 110 | 132 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H C.cajan_47016 110 YQCKTCNRCFPSFQALGGHRASH 132 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00014 | 150 | 172 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H C.cajan_47016 150 HECSICGAEFSSGQALGGHMRRH 172 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.11E-9 | 109 | 172 | No hit | No description |
PROSITE profile | PS50157 | 10.221 | 110 | 137 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.08 | 110 | 132 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.2E-10 | 110 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 112 | 132 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.8E-4 | 146 | 172 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 5.9E-13 | 149 | 174 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 150 | 172 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.743 | 150 | 172 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 152 | 172 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MQLQQEFLVV SKDDTQMIIK GKRTKRQRAP SPLRLLMPNS TSSSTNNSNS IDSTTTTTTI 60 ELRQDEDMAN CLILLAQGRH HVTAPASRHD DNENNNDNND DNKSTRLYLY QCKTCNRCFP 120 SFQALGGHRA SHKKPRQNTG TVSTTKAKAH ECSICGAEFS SGQALGGHMR RHRSLVHASM 180 TTSMSGGNVV AGGSGSHEYQ EAKKPFKLDL NLPAPDDDHR ESKFSFQQRE KVIVFSKSSL 240 VDCHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_47016 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020208777.1 | 1e-151 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A151QN48 | 0.0 | A0A151QN48_CAJCA; Zinc finger protein 1 | ||||
STRING | GLYMA10G06760.2 | 1e-104 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 2e-47 | C2H2 family protein |