PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40525
Common NameKK1_042181
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 637aa    MW: 69078.5 Da    PI: 7.4829
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40525genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07245265526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C++f++ G C++Gd C +aHg
  C.cajan_40525 245 PCPDFRK-GACRRGDMCEYAHG 265
                    8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.0E-932128IPR020683Ankyrin repeat-containing domain
CDDcd002044.57E-834127No hitNo description
SuperFamilySSF484031.21E-835127IPR020683Ankyrin repeat-containing domain
SMARTSM00248773565IPR002110Ankyrin repeat
PROSITE profilePS502978.87982126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.04282112IPR002110Ankyrin repeat
SMARTSM003564.0E-6240266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4245267IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-5245265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582245267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4273303IPR000571Zinc finger, CCCH-type
SMARTSM0035629275298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
GGPEKSKSPS TSSFLGVKVT TNVKEMKTLT VNTEDSFSSL LELASNNDIE GFKLLLEKDS  60
SSINEVGLWY GRQNGSKQFV LEHRTPLMVA ATYGSIDVLK LILLCPKTDV NFACGANKST  120
ALHCAASGVS VDSSSPINSS SPGSPAHSSN GLPYSPSGSP PSPVVSKFTD AAISSLSEKK  180
EYPIDPSLPD IKNSIYATDE FRMFSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH  240
YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGISCNRR VCFFAHTAEE  300
LRPLYVSTGS AVPSPRSSTS APNVMDMAAA MSLLPGSPSS VSSMSPSHFG QPMSPSANGM  360
SLSSAAWAQP NVPALHLPGS NLQSSRLRSS LSARDIPPED FSTMPDLDGQ QHPLNDLSCF  420
LQPRPGAGSV SRSGRSKTLT PSNLEDLFSA EFSSSPRYSD PAAASVFSPT HKSAVLNQFQ  480
QLQSMMSPRN VEPISPMSNR ISAFAQREKQ QQQLRSISSR DLGANSPASV VGSPVNPWSK  540
WGSPNGKVDW SVNGDELGRQ MRRSTSFELK NNGEEPDLSW VQSLVKESPP EMIKEKFASP  600
VPTAAADGLN SNSQIEPTDH SVLGAWLEQM QLDQLVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_40525
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311560.0KT031156.1 Glycine max clone HN_CCL_174 C3H-type 1 Zn transcription factor (Glyma13g27280.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540529.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_014620596.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A151R2600.0A0A151R260_CAJCA; Zinc finger CCCH domain-containing protein 30 (Fragment)
STRINGGLYMA12G36600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-174CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]