PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_38088
Common NameKK1_037985
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 690aa    MW: 74995.3 Da    PI: 6.075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_38088genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-07271291526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ f++ G C+ Gd C +aHg
  C.cajan_38088 271 PCPEFRK-GSCSKGDACEYAHG 291
                    8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002044.77E-915152No hitNo description
SuperFamilySSF484033.22E-1369153IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.8E-1470158IPR020683Ankyrin repeat-containing domain
SMARTSM002489.574104IPR002110Ankyrin repeat
PROSITE profilePS5029716.12274154IPR020683Ankyrin repeat-containing domain
PfamPF000236.9E-5109143IPR002110Ankyrin repeat
PROSITE profilePS5008812.476109144IPR002110Ankyrin repeat
SMARTSM002489.1E-4109141IPR002110Ankyrin repeat
SMARTSM003568.6E-5266292IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-5271291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094271293IPR000571Zinc finger, CCCH-type
SMARTSM0035616301324IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.991301325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MCGVSKEKLS QIGLNMEDEY GKEGMHQKIS LLLEFSAADD LIGFKDAVEK EGHDVDGVGL  60
WYGRRVGSKK LGYEERTPLM VASMFGSLGV SAYIVGTGRV DVNRASRSDG ATALHCAVAG  120
GSAASAEVVK LLLDASADVS VVDANGNRPF DLIVSVVNSI FNPRARLLQA LLEGTDGADQ  180
ACLMLPEVID QIEEQKQDMI TPRLSKDYPV DLSLPDIKNG IYGTDEFRMY SFKVKPCSRA  240
YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPEFRKGSC SKGDACEYAH GIFECWLHPA  300
QYRTRLCKDE SGCTRRVCFF AHKPEELRPL YASTGSAIPS PRSSYSASAS ALEMGSVSPI  360
ALGSPSVMMP PTSTPPLTPS GASSPVTGSM WSQANVSVPM LQLPKSRLKT ASTARDIDSD  420
IELLGLEIHR RRQQLMMDEI SSLSSPSNWK NSVPNSPSFP VSLNDHAGEL NRLSGVKPAN  480
LDDIFGSLDP SVLSKFHGMS LDVTGSQLQS PTGIQMRQNV NQQLGGYSSS LSSSNMSGSR  540
SFRVDHPSGE AAKAALNPRA AAFTKRSQSF IERSVVNHHS ELPSPKPSNL SNWGSPDGKL  600
DWAINGEELN KLRKSASFGF RSSNSPLTKG PANVDDEPDV SWVNSLVKDA PQESGEYGIE  660
DQLTQLPCHN GTDAIPAWLE QLYLEHEMVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_38088
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877020.0KM587702.1 Glycine max clone GmC3H3 C3H zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020202046.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A151RDX90.0A0A151RDX9_CAJCA; Zinc finger CCCH domain-containing protein 66
STRINGGLYMA14G37330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-176C3H family protein