PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_36571 | ||||||||
Common Name | KK1_036014 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 25814.1 Da PI: 8.3793 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.6e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++lvd+++++G +W+t ++ g+ R++k+c++rw +yl C.cajan_36571 13 KGAWSKQEDQKLVDYINKHGEVCWRTLPQAAGLLRCGKSCRLRWINYL 60 79******************99**********99************97 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.7e-18 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+v+++++lG++ W++Ia +++ gRt++++k++w+++ C.cajan_36571 66 RGNFSEDEEDLIVKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 89********************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.948 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-27 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-14 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.99E-10 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 27.157 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-16 | 66 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.73E-12 | 68 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-26 | 68 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MRKPSCDIKD LNKGAWSKQE DQKLVDYINK HGEVCWRTLP QAAGLLRCGK SCRLRWINYL 60 RPDLKRGNFS EDEEDLIVKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRRKLISKGI 120 DPNNHRLKHS IPNLENPPMS DDSSKPCGTK DISKNETSKS PHVYNSGEVS DAASGEAESS 180 CALPDLNLDL SIAIPSASPT VSENNIAPFH ESNSSRKMHF ESPSTLLLFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 8 | 115 | 2 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_36571 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT135603 | 1e-116 | BT135603.1 Lotus japonicus clone JCVI-FLLj-12J12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020239347.1 | 1e-170 | transcription factor MYB3 | ||||
Swissprot | Q9SZP1 | 2e-73 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A151RJ80 | 1e-168 | A0A151RJ80_CAJCA; Transcription repressor MYB4 | ||||
STRING | GLYMA07G33960.1 | 1e-142 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 8e-76 | myb domain protein 4 |