PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_31335
Common NameKK1_030488
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 461aa    MW: 51839.1 Da    PI: 9.2508
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_31335genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-082544525
                   --SGGGGTS--TTTTT-SS-S CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                    C+ffa+ G+C +G++C+F H
  C.cajan_31335 25 VCDFFAK-GWCIRGSSCSFLH 44
                   6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.27E-62044IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4272047IPR000571Zinc finger, CCCH-type
SMARTSM003560.00172146IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-62544IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MCLNRTRSLS PSAEIKDRNK RPRIVCDFFA KGWCIRGSSC SFLHIKDTVN NTDQEAEADL  60
VTAHQKRELK VEEGVRENVE RLRMNEQEAS PSWHPSQEKQ KFHLRDNLFP ENRFAFSASN  120
NYFSPNLPLN STRADGMTTF WNQHMYKGYT STVLSHSPNS SLVTQFPASS MSLSHQIPAQ  180
SGRSFPFRQE DLPLVSSSRV SSFPTGYKSK ICSYDWEPSV PFRPSFFITS MNVSSPGDLY  240
DPLRDSIEIP NIGDGSLKAS LLIHGSNAQA SSQVRAYGDS DVVGKHTSNL NDAKSSVSSH  300
NKFCENETHK NCDPHEKDCF APETEITSGT YLNNQNGKMG TGQHNFGSRH KKKRIGKDKK  360
DHEMDVDFQT DGSMQKEPKA LKIFRAALVD HVKELLKPAW HEGRLSKDAH IMIVKKSVDK  420
VVSTLDPQQI PTIDTAKQYV SSSRVKIAKL VNGYVNKYGK S
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_31335
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-111AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234604.10.0protein FRIGIDA-ESSENTIAL 1
TrEMBLA0A151RZ610.0A0A151RZ61_CAJCA; Zinc finger CCCH domain-containing protein 27
STRINGGLYMA13G31033.20.0(Glycine max)
STRINGGLYMA15G08331.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.17e-49C3H family protein