PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_29008 | ||||||||
Common Name | KK1_026984 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 23337.1 Da PI: 5.2427 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.5 | 2.9e-40 | 10 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkCa+dC++apyf +eq +++fa +hk+FGasnv+kll ++p+++r +am +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l C.cajan_29008 10 PCGACKFLRRKCAADCIFAPYFSSEQgAERFASIHKVFGASNVSKLLLRIPDHDRCEAMVTIAYEAQARIRDPVYGCVSHIFSLQQQVACLQAQLM 105 7***********************9989*******************************************************************9 PP DUF260 96 llkee 100 ++k++ C.cajan_29008 106 QMKAQ 110 99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.688 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.1E-39 | 10 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MASSGSGSSP CGACKFLRRK CAADCIFAPY FSSEQGAERF ASIHKVFGAS NVSKLLLRIP 60 DHDRCEAMVT IAYEAQARIR DPVYGCVSHI FSLQQQVACL QAQLMQMKAQ LDQNQMESRN 120 WSENVGQTFN PFCPTSMNNP ISPQSSFDSI DYNSINDEVS MHDVQSRDDY FSFQACSNKI 180 SYNNNDMGEL QELALRMMRN SNSELSYP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-36 | 3 | 111 | 5 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-36 | 3 | 111 | 5 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_29008 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020231522.1 | 1e-155 | LOB domain-containing protein 16 | ||||
Swissprot | Q9SLB7 | 7e-76 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A151S8M7 | 1e-154 | A0A151S8M7_CAJCA; LOB domain-containing protein 16 | ||||
STRING | XP_007144925.1 | 1e-110 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4509 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-61 | lateral organ boundaries-domain 16 |