PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_28672 | ||||||||
Common Name | KK1_028207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 364aa MW: 41882.6 Da PI: 5.522 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.6 | 6.1e-13 | 73 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W+ eEde l++ v+++G++ W++I ++ + Rt+k+c++rw + C.cajan_28672 73 KGPWSSEEDEVLLRHVTKYGPREWSSIRSKGLLPRTGKSCRLRWVN 118 79*************************8876677**********87 PP | |||||||
2 | Myb_DNA-binding | 44.7 | 3.1e-14 | 129 | 169 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T+eE+ l +++ +q+G++ W++Ia ++ gRt++++k++w C.cajan_28672 129 KFTAEEERLVIELQAQFGNK-WAKIATYLH-GRTDNDVKNFWS 169 79******************.*********.***********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.342 | 68 | 120 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-28 | 71 | 168 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-20 | 71 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-11 | 72 | 122 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.22E-11 | 75 | 120 | No hit | No description |
Pfam | PF13921 | 5.5E-11 | 76 | 126 | No hit | No description |
PROSITE profile | PS51294 | 20.782 | 121 | 176 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-18 | 122 | 174 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-12 | 126 | 174 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-12 | 129 | 169 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.62E-10 | 129 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MTCILTSYVC MFVFELNVIC RTRTVHALTR ESNHTGVKPS ISNTFSGAFY LIRENIETNV 60 EMEKEFDRGY IKKGPWSSEE DEVLLRHVTK YGPREWSSIR SKGLLPRTGK SCRLRWVNKL 120 RPNLKTGCKF TAEEERLVIE LQAQFGNKWA KIATYLHGRT DNDVKNFWSS RRKRLERMLQ 180 RPPTLKPHKN KGKLPLNLVQ VEKVPPCSSN QVEENLSYLT SYMGNNEVFE MINLPDLIKP 240 NYQYLESDPL SAVEVEVDAT PLHTVPSFES SSGYNFPLLP EPLMDYPLFP ECHDLVPEPF 300 DPNFIDEFEQ KKCSEGVCSQ ELETMLPTLG FEGNSQSTSS NGLFKDFSSE IFEYFEQIPT 360 SSEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-27 | 71 | 173 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_28672 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007133863.1 | 1e-179 | hypothetical protein PHAVU_011G215300g | ||||
TrEMBL | A0A151S5I5 | 0.0 | A0A151S5I5_CAJCA; Transcription factor GAMYB | ||||
STRING | XP_007133863.1 | 1e-179 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3693 | 31 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 3e-63 | MYB family protein |