PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_28399
Common NameKK1_029065
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family WRKY
Protein Properties Length: 307aa    MW: 34204.8 Da    PI: 10.3337
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_28399genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31241299360
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                    D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+k
  C.cajan_28399 241 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHPK 299
                    99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.6E-17192237IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.5E-33227299IPR003657WRKY domain
PROSITE profilePS5081129.998234300IPR003657WRKY domain
SuperFamilySSF1182904.05E-27237299IPR003657WRKY domain
SMARTSM007744.7E-38239299IPR003657WRKY domain
PfamPF031064.4E-27241298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEEVEQANRA AVESCHRVLS LLSQPRDQVQ HRNLVVETGE AVVRFKKVVS LLHNGLGHAR  60
VRKVKNPQPP FCQRIFLDNP NSGKTNHLSK NLQFPQTSFH DNSIQELGST IKNSLSLGQP  120
SLELSSKMMF RRNNNSGINL NFDSTSCTPT MSSTRSFISS LSIDGSVANL DGSSFHLIGA  180
PHSSDQNSQQ HKRKCSARGD EGSLKCGSSA RCHCSKKRKH RVKRSIKVPA ISNKLADIPP  240
DDYSWRKYGQ KPIKGSPHPR GYYKCSSMRG CPARKHVERC LEEPTMLIVT YEGEHNHPKL  300
PTQTANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20232301775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_28399
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753520.0EU375352.1 Glycine max transcription factor (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233337.10.0probable WRKY transcription factor 21
SwissprotQ9SR071e-102WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLA0A151S3450.0A0A151S345_CAJCA; Putative WRKY transcription factor 39
STRINGGLYMA02G15920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.17e-98WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]