PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_28090 | ||||||||
Common Name | KK1_030623 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 35337.4 Da PI: 7.2636 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.3 | 4.3e-19 | 128 | 174 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd lv++v+++G++ W+ Ia+ ++ gR +kqc++rw+++l C.cajan_28090 128 KGQWTEEEDSALVKLVEKFGPKKWSEIAKLLQ-GRIGKQCRERWFNHL 174 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 56.8 | 5.3e-18 | 180 | 224 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT eEd +l++a+++ G++ W+ Ia++++ gR ++++k++w++ C.cajan_28090 180 KGPWTLEEDIILIEAHHEIGKK-WSEIAKRLP-GRPENSIKNHWNST 224 79********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.802 | 123 | 178 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.59E-32 | 125 | 221 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-16 | 127 | 176 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-27 | 129 | 179 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.8E-18 | 131 | 189 | No hit | No description |
CDD | cd00167 | 1.75E-15 | 131 | 174 | No hit | No description |
PROSITE profile | PS51294 | 21.7 | 179 | 229 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-16 | 179 | 227 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 180 | 227 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.95E-11 | 182 | 222 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MSVATQNPAF VMGGPSSTPL YGIPTPSLGD GSSSGGGFVD DYHHHPMMLE QNNNNKMDVL 60 PGHHHKGKDI SDFSQKSMIH PFQASSSMTP SPLFLSNENG LPMSEYQWDI DQRMDKFQND 120 NANDNIIKGQ WTEEEDSALV KLVEKFGPKK WSEIAKLLQG RIGKQCRERW FNHLQPNIKK 180 GPWTLEEDII LIEAHHEIGK KWSEIAKRLP GRPENSIKNH WNSTMRRQNC KRQKNNNDSN 240 YEGSLLHAYV KRVTSIEQAT KVLENNNEEH NKSHDVFNGS TSNYVSMQVN NNNNVDGGNI 300 NCAQYWHMLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-45 | 126 | 228 | 2 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-44 | 123 | 228 | 53 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-44 | 123 | 228 | 53 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 8e-45 | 126 | 228 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 8e-45 | 126 | 228 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_28090 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020234701.1 | 0.0 | transcription factor MYB98 | ||||
Swissprot | Q9LVW4 | 6e-50 | MY118_ARATH; Transcription factor MYB118 | ||||
TrEMBL | A0A151RYP6 | 0.0 | A0A151RYP6_CAJCA; Transcription factor MYB98 | ||||
STRING | GLYMA03G15870.2 | 1e-107 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14336 | 10 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 1e-47 | myb domain protein 118 |
Publications ? help Back to Top | |||
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