PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_26125 | ||||||||
Common Name | KK1_027112 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 567aa MW: 63964.2 Da PI: 4.4649 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169 | 1.5e-52 | 20 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +pGfrFhPtdeelv++yLk+k+ gk+l+l +vi+ +d+yk++P dLp + +k+++++w+fF++rd+ky++g r+nrat++gyWkatgkd++v++ C.cajan_26125 20 MPGFRFHPTDEELVMYYLKRKICGKRLKL-DVIRVTDVYKWDPDDLPgQsILKTGDRQWFFFCHRDRKYPNGGRSNRATRHGYWKATGKDRNVVC- 113 69***************************.99**************96446788999**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLvfy grap+ge+tdWvmhey++ C.cajan_26125 114 NSRTVGVKKTLVFYVGRAPSGERTDWVMHEYTM 146 999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-59 | 14 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.229 | 19 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-28 | 21 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MGEASEAGST DCFSQMMSSM PGFRFHPTDE ELVMYYLKRK ICGKRLKLDV IRVTDVYKWD 60 PDDLPGQSIL KTGDRQWFFF CHRDRKYPNG GRSNRATRHG YWKATGKDRN VVCNSRTVGV 120 KKTLVFYVGR APSGERTDWV MHEYTMDEGE LKRCQGVKDY YALYKVYKKS GPGPKNGEQY 180 GAPFNEEEWA DDDIVDFNDN KSDQVAPNDV PGDYSALQPL LDDEIGDIIR EILDDELVLE 240 PQHLNGYPDF PQVVTEETQS TIADQFSEDV VFPEQISIFH PNSQFFDAQP SFDFNQAVTS 300 QLHVSEASEV SSVSNIKTKG LDFHEDGFLE IDDLNDTEPT LSNLEKPMEY QQFEDGLSEL 360 DLYQDAEMFL RDLGPIIHET DSHAYSNALV SSNFESQNCQ LLPNLEDANQ TVSEFWMHGE 420 RNTQSQSEGF VDSFSLSSPV FFGRVLGVVY ESVSFPTEGN NNQSSTLEDV ATSSFSSALW 480 AFVESIPTTP ASAAESALVN RALNRMSSFS RLKIKHTNIA AGKDTATMKR AGRKGLQFLF 540 FPILIALCAF LWIFIGNLRL LGRCISP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-48 | 21 | 146 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 46 | KRKICGKRLK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_26125 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF657305 | 0.0 | KF657305.1 Glycine max NAC transcription factor (SNAC38) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020231654.1 | 0.0 | NAC domain-containing protein 17 | ||||
TrEMBL | A0A151S8K1 | 0.0 | A0A151S8K1_CAJCA; NAC domain-containing protein 78 | ||||
STRING | GLYMA10G36360.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-132 | NAC domain containing protein 17 |