PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_24526

Common Name

KK1_025742

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB

Protein Properties

Length: 286aa MW: 31090.4 Da PI: 8.9633

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_24526	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63	5.8e-20	5	50	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G+++W++I+r ++ gR++k+c++rw + C.cajan_24526 5 KGPWSPEEDEALQRLVEKHGPRNWSLISRSIP-GRSGKSCRLRWCNQ 50 79****************************.*********985 PP
2	Myb_DNA-binding	53.9	4e-17	59	101	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ C.cajan_24526 59 AFTPEEDDTIIRAHARFGNK-WATIARLLH-GRTDNAIKNHWNST 101 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	29.777	1	55	IPR017930	Myb domain
SuperFamily	SSF46689	9.73E-33	2	98	IPR009057	Homeodomain-like
SMART	SM00717	6.9E-18	4	53	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-19	5	50	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-26	6	58	IPR009057	Homeodomain-like
CDD	cd00167	2.16E-17	7	49	No hit	No description
SMART	SM00717	5.1E-14	56	104	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.445	57	106	IPR017930	Myb domain
Pfam	PF00249	7.7E-15	59	101	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-23	59	105	IPR009057	Homeodomain-like
CDD	cd00167	1.58E-11	59	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MDRIKGPWSP EEDEALQRLV EKHGPRNWSL ISRSIPGRSG KSCRLRWCNQ LSPQVEHRAF 60 TPEEDDTIIR AHARFGNKWA TIARLLHGRT DNAIKNHWNS TLKRKCSSAM IDDIQPLKRS 120 VSAGAAIPVS TGLYINPPTP GSPSGSDVSE SSVPVASPSH VYRPVARPGP VLPPVETTSS 180 SNDPPPSLPL SLPGADSSEV SNHAAPPPPP PSNTIPLLPM MAAPVPPPPV MGPFNLSAEF 240 LAVMQEMIRK EVRSYMEMQN GMCFHAADDG FRNASVKRIG ISRIDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	2e-40	4	106	3	105	C-Myb DNA-Binding Domain
1msf_C	2e-40	4	106	3	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269\|PubMed:23809151, ECO:0000269\|PubMed:24894996}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_24526

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress. {ECO:0000269\|PubMed:23809151}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031262	1e-177	KT031262.1 Glycine max clone HN_CCL_49 MYB/HD-like transcription factor (Glyma11g05550.1_like1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020230367.1	0.0	transcription factor MYB44
Swissprot	O23160	4e-97	MYB73_ARATH; Transcription factor MYB73
TrEMBL	A0A151SCD0	0.0	A0A151SCD0_CAJCA; Transcription factor MYB44
STRING	XP_007156759.1	1e-170	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF843	34	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	2e-80	myb domain protein r1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]