PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_19741
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 575aa    MW: 63045.7 Da    PI: 6.0922
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_19741genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07273293526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ f++ G C+ Gd C +aHg
  C.cajan_19741 273 PCPEFRK-GSCSKGDDCEYAHG 293
                    8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.7E-1526174IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-1339151IPR020683Ankyrin repeat-containing domain
PfamPF127967.9E-866137IPR020683Ankyrin repeat-containing domain
SMARTSM002480.03570100IPR002110Ankyrin repeat
PROSITE profilePS5029714.82270144IPR020683Ankyrin repeat-containing domain
CDDcd002046.85E-1372150No hitNo description
PROSITE profilePS5008811.648105140IPR002110Ankyrin repeat
SMARTSM002480.0098105137IPR002110Ankyrin repeat
SMARTSM002483700141176IPR002110Ankyrin repeat
PROSITE profilePS5010313.488268295IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5268294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4273295IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-5273293IPR000571Zinc finger, CCCH-type
SMARTSM0035618303325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MCSGSKKRPS QTGSIMGDEG LHHKISALLE FSAADDVMAF KDAVEKEGLD VDEVGLWYGR  60
RVGSKELGFE ERTPLMIAAM FGSKRVLSYI LGTGCVDVNR ACGSDGATAL HCAVDGGSAA  120
SLEVIKLLLA ASADVSSVDA NGNSCCDLVV SVTNGVFNSR KRILQAILEG AISIDEACLK  180
FEEADQMEKE HQQDVEAFQI PKNGNGKKDY PVDLSLPDIK NGIYSTDEFR MYTFKVRPCS  240
RAYSHDWTEC PFVHPGENAR RRDPMKYQYS CVPCPEFRKG SCSKGDDCEY AHGIFECWLH  300
PAQYRTRLCN ETGCTRRVCF FAHKLEELRP VYASTGSALP SPRSYSASAP SLDPFTLGSP  360
SALTPPMTPS GGSPPVGGTM WHTQSQVPVP TLPLSQSRLK TAQNARDVEL DFELLGLEDH  420
GFIMHPNWEN SMPNSPSFRH HNGELNRLVG VKPFNLEDIF GSQMQSPTGT QVHQNANQQL  480
RGYPSSVIGS PSFRVDQSGT AATMTSNPRN GALSSQNFME HNMVNCDSEF PSRDTRIAVE  540
SSSFFGWNST DGSKLDWTMR GDELKKPNKS SSFGF
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_19741
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211812.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ41e-176C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A445I4K00.0A0A445I4K0_GLYSO; Zinc finger CCCH domain-containing protein 66 isoform B
STRINGGLYMA11G27130.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-158C3H family protein