PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18542
Common NameKK1_019085
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 332aa    MW: 37696.9 Da    PI: 6.8335
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18542genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12194219126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    y   +C+++ +tG+C yGd+CkF+H+
  C.cajan_18542 194 YQPDICKDYKETGYCGYGDSCKFMHD 219
                    67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9192224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878193221IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7193220IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10194219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12194224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.7E-13261312IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.4E-8270312No hitNo description
SuperFamilySSF578504.35E-13270313No hitNo description
CDDcd001623.44E-8271312No hitNo description
PROSITE profilePS5008910.394271309IPR001841Zinc finger, RING-type
SMARTSM001842.7E-4271308IPR001841Zinc finger, RING-type
PROSITE patternPS005180286295IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEDSNQPAES AENQQTEQVC SFFRKPVNRK NIRKRTIENE DNEEEDSNKE TSLLHIQKKT  60
LKPDNKLYFS TGSSKASASV VPSEESGKPV FQFESSKNIQ VQHDNKATAT LETETEFSKD  120
ARAIRERALK QAAESLKGTS TSSKDEKLYK GINNYNDYKA GFRREQTIAS EKAGGSHGPL  180
RASAHIRVSA RFDYQPDICK DYKETGYCGY GDSCKFMHDR GDYKSGWQLD KEWEEAEKAR  240
KMRLAAGDDA DEEGGANLTD EDDEDSLPFA CFICRNPFVD PVVTKCKHYF CEHCALKHHA  300
KNKKCFVCNQ PTLGIFNVAH EIRRKMAEDK IK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-661632611317RING finger protein 113A
5z58_M3e-661632611317RING finger protein 113A
6ff4_t3e-661632611317RING finger protein 113A
6ff7_t3e-661632611317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_18542
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877030.0KM587703.1 Glycine max clone GmC3H6 C3H zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020219369.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-163C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A151TBT20.0A0A151TBT2_CAJCA; Zinc finger CCCH domain-containing protein 1
STRINGXP_007134882.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-160C3H family protein