PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18476
Common NameKK1_019015
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 300aa    MW: 33580.6 Da    PI: 7.8279
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18476genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+  +k+ Gg+ +W++ +r+ g+ R++k+c++rw +yl
    C.cajan_18476 14 KGPWTAEEDEILASFIKKNGGHgSWRSLPRMAGLLRCGKSCRLRWTNYL 62
                     79*******************9***********99************97 PP
2Myb_DNA-binding48.12.7e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
    C.cajan_18476  68 RGPFTLEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-21565IPR009057Homeodomain-like
PROSITE profilePS5129414.981962IPR017930Myb domain
SuperFamilySSF466898.24E-2811109IPR009057Homeodomain-like
SMARTSM007178.1E-121364IPR001005SANT/Myb domain
PfamPF002493.7E-141462IPR001005SANT/Myb domain
CDDcd001673.24E-81662No hitNo description
PROSITE profilePS5129424.53963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2566118IPR009057Homeodomain-like
SMARTSM007173.0E-1467115IPR001005SANT/Myb domain
PfamPF002493.7E-1468113IPR001005SANT/Myb domain
CDDcd001674.50E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWTAE EDEILASFIK KNGGHGSWRS LPRMAGLLRC GKSCRLRWTN  60
YLRPDIKRGP FTLEEEKLVI QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLKSM  120
GLDPKTHEPL ASSSYPFHKA PASVSTRHMA QWESARLEAE ARLSNESSRL TNHSSLADIN  180
KTTDSDYFLR IWNSEVGEAF RNVRHKGENK VTSSCHSPLS AGSSSNKCES VATNAELASN  240
AQDTPENTMK EELEWRTRGS DSSSSNDMED SSDTALQLLL DFPINNDMSF LEENSFVCPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121175108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKRLKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_18476
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-155AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020219251.10.0transcription factor MYB41
SwissprotQ9M2D91e-124MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A151TBJ10.0A0A151TBJ1_CAJCA; Protein ODORANT1
STRINGGLYMA09G39721.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-120myb domain protein 17