PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13761
Common NameKK1_014183
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TALE
Protein Properties Length: 513aa    MW: 56825.2 Da    PI: 6.6406
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13761genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-084324701854
                    HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  C.cajan_13761 432 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 470
                    5887779******************************88 PP

2BELL72.38.3e-24305373271
           BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                     ++ ++kk +Ll+ll+ Vd+rY+q+ ++++tv+s+F+a+++l++ +++ ++Al++iS  +r L+++i++ 
  C.cajan_13761 305 SHATESKKGQLLTLLQLVDNRYSQCLDEIHTVVSAFHAATELDP-QIHSHFALQTISILYRDLRERIINY 373
                    57899***************************************.**********************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.9E-21228372IPR006563POX domain
PfamPF075265.1E-26234370IPR006563POX domain
PROSITE profilePS5007111.078411474IPR001356Homeobox domain
SMARTSM003896.9E-6414478IPR001356Homeobox domain
CDDcd000865.66E-11414475No hitNo description
SuperFamilySSF466892.05E-15416483IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-26417480IPR009057Homeodomain-like
PfamPF059208.0E-15431470IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MYIAGRGATV TYEISQHSTS KPLIQCYSLD LNNKTIINGI PMLSGEQGEL ISNAYADACL  60
INPSIIANSS PLVTSQGKTI VADASNPMEN SELQEHLVGG MPNTPSSLAA ILAARIGLAE  120
KLENSEALPP SLCSTGPLAP FFNILHGSSN SLAASFEDCG YNEVPSKWNA NNKELSLSLA  180
TSTTAGQCLE VSCSNVTPCV DGTMLGLEQA SCSSSRELSM NMGGNKYVQF SPEVLESRYL  240
VGIQEILAQI ARYSFENLEQ LNYSAASNRS GGNKSTSAFS LKRRILIDHN ANSVYEARAE  300
SPLQSHATES KKGQLLTLLQ LVDNRYSQCL DEIHTVVSAF HAATELDPQI HSHFALQTIS  360
ILYRDLRERI INYILAMGST FDNSCSEENE WSVETSFLQK QWALQQLKRK DQLWRPQRGL  420
PERSVSVLRA WMFQNFLHPY PKDAEKHLLA VKSGLTRSQV SNWFINARVR LWKPMIEEMY  480
AEMNKRKACR NEEGLQSSHG NRISISNQRF SVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A9e-15420478563Homeobox protein Meis2
4xrm_B9e-15420478563Homeobox protein Meis2
4xrs_A8e-15420477158Homeobox protein Meis1
4xrs_B8e-15420477158Homeobox protein Meis1
5bng_A9e-15420478159Homeobox protein Meis2
5bng_B9e-15420478159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13761
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945590.0BT094559.1 Soybean clone JCVI-FLGm-18H4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020224338.10.0homeobox protein ATH1 isoform X1
RefseqXP_020224339.10.0homeobox protein ATH1 isoform X1
SwissprotP487311e-106ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A151SVI10.0A0A151SVI1_CAJCA; Homeobox protein ATH1
STRINGXP_007136819.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-108homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]