PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_13761 | ||||||||
Common Name | KK1_014183 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TALE | ||||||||
Protein Properties | Length: 513aa MW: 56825.2 Da PI: 6.6406 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.2 | 1.4e-08 | 432 | 470 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + C.cajan_13761 432 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 470 5887779******************************88 PP | |||||||
2 | BELL | 72.3 | 8.3e-24 | 305 | 373 | 2 | 71 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 ++ ++kk +Ll+ll+ Vd+rY+q+ ++++tv+s+F+a+++l++ +++ ++Al++iS +r L+++i++ C.cajan_13761 305 SHATESKKGQLLTLLQLVDNRYSQCLDEIHTVVSAFHAATELDP-QIHSHFALQTISILYRDLRERIINY 373 57899***************************************.**********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.9E-21 | 228 | 372 | IPR006563 | POX domain |
Pfam | PF07526 | 5.1E-26 | 234 | 370 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.078 | 411 | 474 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-6 | 414 | 478 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.66E-11 | 414 | 475 | No hit | No description |
SuperFamily | SSF46689 | 2.05E-15 | 416 | 483 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.4E-26 | 417 | 480 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.0E-15 | 431 | 470 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MYIAGRGATV TYEISQHSTS KPLIQCYSLD LNNKTIINGI PMLSGEQGEL ISNAYADACL 60 INPSIIANSS PLVTSQGKTI VADASNPMEN SELQEHLVGG MPNTPSSLAA ILAARIGLAE 120 KLENSEALPP SLCSTGPLAP FFNILHGSSN SLAASFEDCG YNEVPSKWNA NNKELSLSLA 180 TSTTAGQCLE VSCSNVTPCV DGTMLGLEQA SCSSSRELSM NMGGNKYVQF SPEVLESRYL 240 VGIQEILAQI ARYSFENLEQ LNYSAASNRS GGNKSTSAFS LKRRILIDHN ANSVYEARAE 300 SPLQSHATES KKGQLLTLLQ LVDNRYSQCL DEIHTVVSAF HAATELDPQI HSHFALQTIS 360 ILYRDLRERI INYILAMGST FDNSCSEENE WSVETSFLQK QWALQQLKRK DQLWRPQRGL 420 PERSVSVLRA WMFQNFLHPY PKDAEKHLLA VKSGLTRSQV SNWFINARVR LWKPMIEEMY 480 AEMNKRKACR NEEGLQSSHG NRISISNQRF SVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 9e-15 | 420 | 478 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 9e-15 | 420 | 478 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 8e-15 | 420 | 477 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 8e-15 | 420 | 477 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 9e-15 | 420 | 478 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 9e-15 | 420 | 478 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_13761 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094559 | 0.0 | BT094559.1 Soybean clone JCVI-FLGm-18H4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020224338.1 | 0.0 | homeobox protein ATH1 isoform X1 | ||||
Refseq | XP_020224339.1 | 0.0 | homeobox protein ATH1 isoform X1 | ||||
Swissprot | P48731 | 1e-106 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A151SVI1 | 0.0 | A0A151SVI1_CAJCA; Homeobox protein ATH1 | ||||
STRING | XP_007136819.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5939 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 1e-108 | homeobox gene 1 |
Publications ? help Back to Top | |||
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