PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_13622 | ||||||||
Common Name | KK1_014038 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 22331.4 Da PI: 6.7383 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.5 | 8.3e-42 | 37 | 136 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++k+l++lpe +r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+ C.cajan_13622 37 PCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPEFQRADAVASMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAK 132 7*********************************************************************************************** PP DUF260 97 lkee 100 +++e C.cajan_13622 133 AQAE 136 9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.879 | 36 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-42 | 37 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
KFTKMKSDTN SPTSSPTFSH SSNNNIASSP PQVVMSPCAA CKILRRRCAE KCVLAPYFPP 60 TEPAKFTTAH RVFGASNIIK FLQELPEFQR ADAVASMVYE ASARIRDPVY GCAGAICQLQ 120 KQVNELQAQL AKAQAEVVDM QFQQANLLAL ISMEMSPTPQ ESPQQSVDNF ISSPSHSIDY 180 QNSCNFFEEM AKANLNSMWE PL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-42 | 36 | 138 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-42 | 36 | 138 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_13622 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020224669.1 | 1e-145 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 2e-73 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A151SV03 | 1e-147 | A0A151SV03_CAJCA; LOB domain-containing protein 11 (Fragment) | ||||
STRING | GLYMA13G40370.2 | 1e-112 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-68 | LOB domain-containing protein 11 |