PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_08704

Common Name

KK1_008957

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 276aa MW: 31439.8 Da PI: 9.4087

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_08704	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	184	3.6e-57	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeel+++yL +kv+++k+++ ++i evd++++ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ + C.cajan_08704 16 LPPGFRFHPTDEELISHYLYRKVTDTKFSA-RAIGEVDLNRSEPWDLPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFR-G 109 79************************99.89***********99999*************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg+kktLvfy+grapkgektdWvmheyrle C.cajan_08704 110 KSLVGMKKTLVFYRGRAPKGEKTDWVMHEYRLE 142 99***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-65	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	60.287	16	166	IPR003441	NAC domain
Pfam	PF02365	6.4E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MENVSVLCKE EDKMNLPPGF RFHPTDEELI SHYLYRKVTD TKFSARAIGE VDLNRSEPWD 60 LPYKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFRGK SLVGMKKTLV 120 FYRGRAPKGE KTDWVMHEYR LEGKFSVHNL PKTAKNEWVI CRVFQKSLGV KKSHISGMMM 180 LDSFGNELGS SALPPLTDSS PSIGNTKALR SNLRNGFEVA EREMVSVSHE TDVSTNVNAE 240 ISSVLSNLDM GKRHFENQNN PIASAAPVDL ATLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-55	13	172	17	174	NAC domain-containing protein 19
3swm_B	3e-55	13	172	17	174	NAC domain-containing protein 19
3swm_C	3e-55	13	172	17	174	NAC domain-containing protein 19
3swm_D	3e-55	13	172	17	174	NAC domain-containing protein 19
3swp_A	3e-55	13	172	17	174	NAC domain-containing protein 19
3swp_B	3e-55	13	172	17	174	NAC domain-containing protein 19
3swp_C	3e-55	13	172	17	174	NAC domain-containing protein 19
3swp_D	3e-55	13	172	17	174	NAC domain-containing protein 19
4dul_A	2e-55	13	172	14	171	NAC domain-containing protein 19
4dul_B	2e-55	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_08704

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ028773	0.0	DQ028773.1 Glycine max NAC domain protein NAC5 (NAC5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020212218.1	1e-156	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-123	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A151TRZ6	0.0	A0A151TRZ6_CAJCA; Protein CUP-SHAPED COTYLEDON 2
STRING	XP_007138169.1	1e-145	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-125	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]