PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_07372
Common NameKK1_007575
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 307aa    MW: 34442.8 Da    PI: 7.3535
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_07372genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.9e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd+ lv++++++G g+W+t +++ g+ R++k+c++rw +yl
    C.cajan_07372 14 RGAWTPEEDQALVHYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding53.45.8e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+  +v+++ +lG++ W++Ia+ ++ gRt++++k++w+++l
    C.cajan_07372  67 RGPFTNEEESTIVQLHGMLGNR-WAAIASQLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.974961IPR017930Myb domain
SuperFamilySSF466893.67E-3111108IPR009057Homeodomain-like
SMARTSM007172.2E-141363IPR001005SANT/Myb domain
PfamPF002493.3E-171461IPR001005SANT/Myb domain
CDDcd001671.17E-111661No hitNo description
PROSITE profilePS5129425.47662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2665116IPR009057Homeodomain-like
SMARTSM007171.5E-1666114IPR001005SANT/Myb domain
PfamPF002491.1E-1567112IPR001005SANT/Myb domain
CDDcd001672.81E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGKAPCCEKH GVRRGAWTPE EDQALVHYIN KHGHGSWRTL PKHAGLLRCG KSCRLRWINY  60
LRPGIKRGPF TNEEESTIVQ LHGMLGNRWA AIASQLPGRT DNEIKNYWNT HLKKRLVGPS  120
HSLRAKQPCV IPDLTIIKSE SPSTRHMVQW ESVRVEAEAR LSMESLLINS WPTTKTCSDH  180
FLQLWHSEVG QSFRMLKGKE GVLCQSCVSQ PSSSSKLESC SDESLQVKNT GTSSCNPNLE  240
DVNIIHEQTS SYKPKLDDDT AGSESGNYEF LDISDSSLKH LLDMHDSDIG FLGQNGNFLN  300
LLDGTYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_07372
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352300.0AC235230.1 Glycine max strain Williams 82 clone GM_WBb0026I18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020209252.10.0transcription factor MYB41
SwissprotQ9M2D91e-93MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A151U6C40.0A0A151U6C4_CAJCA; Myb-related protein Myb4
STRINGXP_007143400.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.17e-91myb domain protein 17