PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_05455 | ||||||||
Common Name | KK1_005590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 20126.3 Da PI: 5.7125 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.7 | 1.6e-09 | 48 | 83 | 24 | 55 |
AP2 24 e.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 + +g +r kr +lg+f+taeeAa +++a+ kl+g C.cajan_05455 48 KfRGvrQRpKRLWLGTFDTAEEAATEYDRAAVKLKG 83 335554457************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.948 | 15 | 91 | IPR001471 | AP2/ERF domain |
PIRSF | PIRSF038123 | 4.4E-44 | 19 | 185 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
SuperFamily | SSF54171 | 1.57E-12 | 47 | 92 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.71E-19 | 47 | 90 | No hit | No description |
Pfam | PF00847 | 1.2E-5 | 48 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-15 | 48 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-14 | 57 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MRIPLSYNSF SSSSSYSSAS ASTCSSEQLH KRPKKLPPSS AAGRRRSKFR GVRQRPKRLW 60 LGTFDTAEEA ATEYDRAAVK LKGPNAVTNF PLAPPAPSSP VVVVDSFSTD GGASYSDLVA 120 SPTSVLTFDS TPFDGFRYGD VDAFGFRIDA PLSLPDVDVA LTCHHGKDEE AFGEFDLDEF 180 ITWPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_05455 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020202440.1 | 1e-102 | pathogenesis-related genes transcriptional activator PTI6 | ||||
Swissprot | O04682 | 6e-31 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A151U0Y4 | 1e-131 | A0A151U0Y4_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA02G40320.1 | 9e-79 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 2e-17 | cytokinin response factor 4 |