PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_04734 | ||||||||
Common Name | KK1_004854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TALE | ||||||||
Protein Properties | Length: 514aa MW: 57712.1 Da PI: 6.3427 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.1 | 1.5e-08 | 433 | 471 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + C.cajan_04734 433 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 471 5887779******************************88 PP | |||||||
2 | BELL | 67.8 | 2.1e-22 | 303 | 374 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er++ ++ k++Ll ll+ Vd+rY+ + ++++tv+s+F+a+++l++ +++++Al++i+ ++ L+++i+++i C.cajan_04734 303 ERHATESNKSQLLVLLQLVDNRYSECLDEIHTVVSAFHAATELDPHIMHAHFALQTITLLYKDLRERISNHI 374 78999****************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.4E-15 | 225 | 372 | IPR006563 | POX domain |
Pfam | PF07526 | 3.7E-24 | 231 | 371 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 10.932 | 412 | 475 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-6 | 415 | 479 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.31E-11 | 415 | 476 | No hit | No description |
SuperFamily | SSF46689 | 2.05E-15 | 417 | 484 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.4E-26 | 418 | 481 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.0E-15 | 432 | 471 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MENNMYSAPL DMAGRISTAI EEITQHLAPK PLVHCYSFDL NNQSHIIDGI PVLAGGEQGE 60 PTSDVHVDGC FINPATIADS NSFIASQGKT VVGDASNPIN NNDFHEHLAG GRPITSASLA 120 ARISLQENLE NSSAALPPSF CSLEAIGPYI FNNWQEIQTW IKMDGHRQIN ELSLSLARSP 180 TTGQCSEMSC SDVSNRMNVT TMSGLEQPSC SSKDLSMRLD SNKHVQFSPA ILGSRYLAGI 240 QEILTQIATY SFENVELMNY SVAGVRAGGN NNSASAFTPK RRVAINQNAN SMFEAHVEES 300 PLERHATESN KSQLLVLLQL VDNRYSECLD EIHTVVSAFH AATELDPHIM HAHFALQTIT 360 LLYKDLRERI SNHILAMGPD FNSLCSEEEK EWCVETSFIQ KQWALQQLKR KDHLWRPQRG 420 LPERSVSVLR AWMFQNFLHP YPKDAEKHLL AVKSGLTRSQ VSNWFINARV RLWKPMIEEM 480 YAEMNRRKAC RNEEGMESTH RSRLSMNNQM LNIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-14 | 421 | 479 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-14 | 421 | 479 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_04734 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020208840.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_020208846.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_020208857.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_029129924.1 | 0.0 | homeobox protein ATH1 | ||||
Swissprot | P48731 | 1e-103 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A151TYY1 | 0.0 | A0A151TYY1_CAJCA; Homeobox protein ATH1 | ||||
STRING | XP_007160994.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5939 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 1e-105 | homeobox gene 1 |
Publications ? help Back to Top | |||
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