PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_02738
Common NameKK1_002803
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family Trihelix
Protein Properties Length: 379aa    MW: 43322.9 Da    PI: 5.7353
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_02738genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.41.6e-2768150286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    W ++e++ Li +rrem+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++ +    s +++y+++++
  C.cajan_02738  68 WVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRAG--SGSAKMSYYKEID 150
                    ********************************************************************98..45558*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-459129IPR009057Homeodomain-like
PROSITE profilePS500908.45560124IPR017877Myb-like domain
SMARTSM007170.001164126IPR001005SANT/Myb domain
CDDcd122031.05E-2866131No hitNo description
PfamPF138371.3E-2067152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MYLSEKPRPI DFYKEEGARD MMIEVVSNGD LPPPPPLHPA PPPMILGESS GEDPEVEIKA  60
PKKRAETWVQ DETRSLIGLR REMDALFNTS KSNKHLWEQI SAKMREKGFD RSPTMCTDKW  120
RNLLKEFKKA KHQDRAGSGS AKMSYYKEID EILRERSKSV QYKSPTPPPK VDSFMQFADK  180
GIDDTSISFG PVEATGRPTL NLERSLDHDG HPLAITTADA VAASGVPPWN WREAPGNGGE  240
SQSCCGRVIS VKWGDYTRRI GIDGTPEAIK EAIRAAFRLR TKRTFWLEDE DQIIRSIDRE  300
MPIGNYTLHL DEGMAIKLCL YDESDHIPVH TEDKIFYTED DYRDFLTRRG WICLREFDGY  360
RNIDNMDDLR PGAMYRGMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4862148186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_02738
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2852650.0EU285265.1 Glycine max GT-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020225923.20.0trihelix transcription factor GT-4
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A151SPA30.0A0A151SPA3_CAJCA; Uncharacterized protein
STRINGXP_007163722.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]