PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_02206 | ||||||||
Common Name | KK1_002259 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 544aa MW: 62718.4 Da PI: 9.1843 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.9 | 9.4e-08 | 338 | 377 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eE e l + +q+G++ Wk++a +g + + ++k+ w+ C.cajan_02206 338 GWTPEELEFLRKMKEQHGSD-WKSVAVALG--KHRFHVKDAWR 377 5*******************.********9..56677777666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.031 | 262 | 333 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-4 | 265 | 352 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.748 | 331 | 380 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.015 | 335 | 382 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.02E-7 | 336 | 397 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 6.1E-11 | 339 | 397 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-8 | 353 | 392 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.166 | 381 | 449 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.5 | 385 | 451 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-5 | 393 | 468 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.18E-6 | 435 | 507 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.631 | 451 | 504 | IPR017877 | Myb-like domain |
SMART | SM00717 | 26 | 455 | 506 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 544 aa Download sequence Send to blast |
MDEKAKKKGG KDVEVMNSNI PDGKEVQFLD DNQERKMKKR KKYDSSLDGM QESDFSKPSK 60 KMRKVNGLKN NKGEDDDQHK QIKKSGGESQ HKDYNEDKDG SHYEKKKKKS SKESKSQVYN 120 EFESKEGGDD DQGKHIKKIK KSGGDGDQGK KMKKKKSGED SQHVDYDEFK SNEAKNDGQH 180 KKEEKRKKKK LSEESKSKYN EFKSNEDDGQ GKKMKKKKLH DKSKNKENNT SESPNPGHSG 240 SSKPKRVTFS DQVDVCCDGL VRGKRFTPEE DKRIELAVFD YIESHGLGDE GLDMVLNCIH 300 YPAVRDCWKE IGLALPERPQ LSVYNRAHVL FERSEKRGWT PEELEFLRKM KEQHGSDWKS 360 VAVALGKHRF HVKDAWRRIK SADANKGRWI QEEYQKLFDL VNVDLRGRAS QVHRKTKHGM 420 LRDNIGWEAI GDKFTRSSSS CCEKWYNKLT SPMVAHGVWS DTDDYRLVNA LFTLDACCME 480 EVDWDNLIEN RSGDVCRKRW NQMVQCIGEH GGKSFAEQIE ILAKRFCPDL LEVREAFDAI 540 PVSC |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 37 | 41 | KKRKK |
2 | 183 | 190 | EKRKKKKL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_02206 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020227626.1 | 0.0 | midasin | ||||
TrEMBL | A0A151SMQ3 | 0.0 | A0A151SMQ3_CAJCA; Cyclin-D-binding Myb-like transcription factor 1 | ||||
STRING | GLYMA13G19060.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6704 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-115 | MYB_related family protein |