PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_01726 | ||||||||
Common Name | KK1_001769 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 37863.8 Da PI: 8.9351 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.3 | 4.9e-56 | 9 | 135 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeel+++yL kkv ++k+ + ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ + C.cajan_01726 9 LPPGFRFHPTDEELISHYLYKKVMDTKFCA-RAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFR-G 102 79*************************998.89***************888999****************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg+kktLvfy+grapkgek++Wvmheyrle C.cajan_01726 103 KSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 135 99*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-64 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.693 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-29 | 10 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MENADHIDLP PGFRFHPTDE ELISHYLYKK VMDTKFCARA IGEVDLNKSE PWDLPWKAKM 60 GEKEWYFFCV RDRKYPTGLR TNRATEAGYW KATGKDKEIF RGKSLVGMKK TLVFYRGRAP 120 KGEKSNWVMH EYRLEGKFSV HNLPKTAKNE WVICRVFQKS SAGKKTHISG IMRLDSFGNQ 180 FASSALPPLS DSSPSIGNNT KPFNDSVYVP CFSNPIERNP EGVFDSVFGV SSNSFDILPR 240 VPPSASFYAQ PAPNFPFQAS LCTQQDHTIL RALCENNGFK SERDITSVSQ ETPLTPHVNA 300 QPSSNFDMGR RPFHNHNHAP VSVAPSDPDG FWIY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-53 | 6 | 165 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 6 | 165 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 6 | 165 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 6 | 165 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-53 | 6 | 165 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-53 | 6 | 165 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-53 | 6 | 165 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-53 | 6 | 165 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-53 | 6 | 165 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-53 | 6 | 165 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-53 | 6 | 165 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-53 | 6 | 165 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-53 | 6 | 165 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 6 | 165 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_01726 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU661925 | 0.0 | EU661925.1 Glycine max NAC domain protein (NAC28) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020227105.1 | 0.0 | NAC domain-containing protein 100 isoform X2 | ||||
Swissprot | Q9FLJ2 | 1e-142 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A151SLC6 | 0.0 | A0A151SLC6_CAJCA; Protein CUP-SHAPED COTYLEDON 2 | ||||
STRING | GLYMA05G00930.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-137 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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